R-Index (Morphokinetics)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

R

r - Variable in class geneticAlgorithm.mutation.BgaBasedMutator: mutation range
R - Variable in class ratesLibrary.CatalysisRates: Molecular interdistance (m).
r2 - Variable in class utils.LinearRegression
R2() - Method in class utils.LinearRegression: Returns the coefficient of determination R².
rand(int) - Static method in class utils.akting.RichArray
rand - Static variable in class utils.StaticRandom
randn(int) - Static method in class utils.akting.RichArray
RandomApp - Class in utils.edu.cornell.lassp.houle.rngPack: RandomApp is a simple application that demonstrates the use of RngPack.
RandomApp() - Constructor for class utils.edu.cornell.lassp.houle.rngPack.RandomApp
randomAtom(Node, double) - Method in class utils.list.atoms.AtomsAvlTree
RandomElement - Class in utils.edu.cornell.lassp.houle.rngPack: RandomElement is an abstract class that encapsulates random number generators.
RandomElement() - Constructor for class utils.edu.cornell.lassp.houle.rngPack.RandomElement
randomElement() - Method in class utils.list.atoms.AtomsArrayList
randomElement() - Method in class utils.list.atoms.AtomsAvlTree: Chooses a random atom from current tree.
randomElement() - Method in interface utils.list.atoms.IAtomsCollection: Chooses a random atom or island.
RandomJava - Class in utils.edu.cornell.lassp.houle.rngPack: RandomJava is a class wrapper for the Math.random() generator that comes with Java.
RandomJava() - Constructor for class utils.edu.cornell.lassp.houle.rngPack.RandomJava
randomSeed - Variable in class basic.Parser: See Parser.randomSeed().
randomSeed() - Method in class basic.Parser: Selects to use randomSeed, based on the current time in ms.
RandomSeedable - Class in utils.edu.cornell.lassp.houle.rngPack: RandomSeedable is an abstract class that extends the RandomElement class to include the ability to automatically generate a valid long seed from the clock.
RandomSeedable() - Constructor for class utils.edu.cornell.lassp.houle.rngPack.RandomSeedable
RandomSelection - Class in geneticAlgorithm.selection
RandomSelection() - Constructor for class geneticAlgorithm.selection.RandomSelection
RandomShuffle - Class in utils.edu.cornell.lassp.houle.rngPack: RandomShuffle uses one random number generator to shuffle the numbers produced by another to obliterate sequential correlations.
RandomShuffle(RandomElement, RandomElement, int) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.RandomShuffle
RandomSynchronized - Class in utils.edu.cornell.lassp.houle.rngPack: RandomSynchronized is a wrapper class that makes a random number generator safe for multi-threaded operation by serializing access in time.
RandomSynchronized(RandomElement) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.RandomSynchronized
RANECU - Static variable in class utils.edu.cornell.lassp.houle.rngPack.RandomApp
Ranecu - Class in utils.edu.cornell.lassp.houle.rngPack: Ranecu is an advanced multiplicative linear congruential random number generator with a period of aproximately 10¹⁸.
Ranecu() - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranecu: Initialize RANECU with the default seeds from James.
Ranecu(int, int) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranecu: Initialize RANECU with two specified integer seeds.
Ranecu(long) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranecu
Ranecu(Date) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranecu
RANJAVA - Static variable in class utils.edu.cornell.lassp.houle.rngPack.RandomApp
RankingSelection - Class in geneticAlgorithm.selection
RankingSelection() - Constructor for class geneticAlgorithm.selection.RankingSelection
RANLUX - Static variable in class utils.edu.cornell.lassp.houle.rngPack.RandomApp
Ranlux - Class in utils.edu.cornell.lassp.houle.rngPack: RANLUX is an advanced pseudo-random number generator based on the RCARRY algorithm proposed in 1991 by Marsaglia and Zaman.
Ranlux() - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranlux: Default initialization of RANLUX.
Ranlux(int, int) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranlux: Initialize RANLUX with specified luxury level and seed.
Ranlux(int, long) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranlux: Initialize RANLUX with specified luxury level and seed.
Ranlux(int) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranlux: Initialize RANLUX with default luxury level and a specified seed.
Ranlux(long) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranlux: Initialize RANLUX with default luxury level and a specified seed.
Ranlux(int, Date) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranlux: Initialize RANLUX with specified luxury level and a Date object.
Ranlux(Date) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranlux: Initialize RANLUX with default luxury level and a Date object.
RANMAR - Static variable in class utils.edu.cornell.lassp.houle.rngPack.RandomApp
Ranmar - Class in utils.edu.cornell.lassp.houle.rngPack: RANMAR is a lagged Fibonacci generator proposed by Marsaglia and Zaman and is a good research grade generator.
Ranmar(int) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranmar: Initialize Ranmar with a specified integer seed
Ranmar(long) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranmar: Initialize Ranmar with a specified long seed
Ranmar() - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranmar: Initialize Ranmar with a default seed taken from Marsaglia and Zaman's paper.
Ranmar(Date) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.Ranmar: Seed RANMAR from the clock.
ranmarin(int) - Method in class utils.edu.cornell.lassp.houle.rngPack.Ranmar: Internal methods: ranmarin is the initialization code for the generator.
RANMT - Static variable in class utils.edu.cornell.lassp.houle.rngPack.RandomApp
RanMT - Class in utils.edu.cornell.lassp.houle.rngPack: Mersenne Twister -- advanced psuedorandom generator with a period of 2¹⁹⁹³⁷-1 Source code is available.
RanMT() - Constructor for class utils.edu.cornell.lassp.houle.rngPack.RanMT
RanMT(long) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.RanMT
RanMT(Date) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.RanMT
RanMT(int[]) - Constructor for class utils.edu.cornell.lassp.houle.rngPack.RanMT: If a 32 bit seed isn't enough for you, you can pass an array of 624 integers.
rate - Variable in class kineticMonteCarlo.process.AbstractProcess
rateMap - Variable in class ratesLibrary.GrapheneSchoenhalzRates
rates - Variable in class basic.AbstractSimulation
rates - Variable in class kineticMonteCarlo.atom.GrapheneAtomGaillard
rates - Variable in class kineticMonteCarlo.atom.GrapheneAtomSchoenhalz
rates - Variable in class kineticMonteCarlo.kmcCore.growth.ActivationEnergy
rates - Variable in class ratesLibrary.GrapheneSyntheticRates
rates - Variable in class utils.list.AbstractList
RatesCase - Class in ratesLibrary.basic
RatesCase() - Constructor for class ratesLibrary.basic.RatesCase
RatesCaseE - Class in ratesLibrary.basic
RatesCaseE() - Constructor for class ratesLibrary.basic.RatesCaseE
RatesCaseF - Class in ratesLibrary.basic: Etch rates data obtained from Gosalvez Et al - Physical Review E 68 (2003) 031604
RatesCaseF() - Constructor for class ratesLibrary.basic.RatesCaseF
RatesCaseH - Class in ratesLibrary.basic: Etch rates data obtained from Gosalvez Et al - Physical Review E 68 (2003) 031604
RatesCaseH() - Constructor for class ratesLibrary.basic.RatesCaseH
RatesCaseOther - Class in ratesLibrary.basic: Etch rates data obtained from Gosalvez Et al - Physical Review E 68 (2003) 031604
RatesCaseOther() - Constructor for class ratesLibrary.basic.RatesCaseOther
ratesLength - Variable in class utils.list.AbstractList
ratesLibrary - package ratesLibrary
ratesLibrary - Variable in class basic.GrapheneSimulation
ratesLibrary - Variable in class basic.Parser: See Parser.getRatesLibrary().
ratesLibrary - Variable in class kineticMonteCarlo.lattice.CatalysisLattice
ratesLibrary.basic - package ratesLibrary.basic
ratesLibrary.concerted - package ratesLibrary.concerted
ratesVector - Variable in class ratesLibrary.GrapheneSchoenhalzRates
raw() - Method in class utils.edu.cornell.lassp.houle.rngPack.RandomElement: The abstract method that must be defined to make a working RandomElement.
raw(double[], int) - Method in class utils.edu.cornell.lassp.houle.rngPack.RandomElement: Fill part or all of an array with doubles.
raw(double[]) - Method in class utils.edu.cornell.lassp.houle.rngPack.RandomElement: Fill an entire array with doubles.
raw() - Method in class utils.edu.cornell.lassp.houle.rngPack.RandomJava: Wrapper for Math.random().
raw() - Method in class utils.edu.cornell.lassp.houle.rngPack.RandomShuffle: The generator.
raw() - Method in class utils.edu.cornell.lassp.houle.rngPack.RandomSynchronized: Synchronized the raw() method, which is generally not threadsafe.
raw(double[], int) - Method in class utils.edu.cornell.lassp.houle.rngPack.RandomSynchronized: This method probably isn't threadsafe in implementations, so it's synchronized
raw() - Method in class utils.edu.cornell.lassp.houle.rngPack.Ranecu
raw(double[], int) - Method in class utils.edu.cornell.lassp.houle.rngPack.Ranecu: This is an inline version that returns an array of doubles for speed.
raw() - Method in class utils.edu.cornell.lassp.houle.rngPack.Ranlux: The random number generator.
raw() - Method in class utils.edu.cornell.lassp.houle.rngPack.Ranmar: The generator
raw(double[], int) - Method in class utils.edu.cornell.lassp.houle.rngPack.Ranmar: A version of the generator for filling arrays, inlined for speed
raw() - Method in class utils.edu.cornell.lassp.houle.rngPack.RanMT
raw() - Static method in class utils.StaticRandom
rawInteger(int) - Static method in class utils.StaticRandom: Returns an integer random number between 0 (inclusive) and given number (exclusive)
reactAtom() - Method in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
REACTION - Static variable in class kineticMonteCarlo.process.CatalysisProcess
reactionEnergiesCoO - Variable in class ratesLibrary.CatalysisRates
reactionEnergiesCoOCoCusCoCus - Variable in class ratesLibrary.CatalysisRates
reactionRateCoO - Variable in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
reactionRateCoOCoCusCoCus - Variable in class kineticMonteCarlo.kmcCore.catalysis.CatalysisFarkasKmc
readAndSetStatistics(String) - Method in class kineticMonteCarlo.lattice.perimeterStatistics.Statistics
readDataTextFile(String) - Method in class basic.io.Restart: Reads a file to a ArrayList of unknown size aimed to be like array[][].
readExperimentalData() - Static method in class main.Morphokinetics
readFile(String) - Method in class basic.io.Restart
readFile(String) - Method in class basic.Parser: Read the execution parameters from the given file.
readGitRevision(String) - Static method in class basic.io.RestartLow
readLowBinary(String) - Static method in class basic.io.RestartLow: This method reads the binary file
readLowText2D(String) - Static method in class basic.io.RestartLow
readLowText2D(String, int[], boolean) - Static method in class basic.io.RestartLow
readLowTextData(String) - Static method in class basic.io.RestartLow: Reads a file to a ArrayList of unknown size aimed to be like array[][]
readObject(ObjectInputStream) - Method in class utils.edu.cornell.lassp.houle.rngPack.RandomSynchronized
readPsdText2D(int, int[], String) - Method in class basic.io.Restart
readReference - Variable in class basic.Parser
readSmallTextFile(String) - Static method in class basic.io.RestartLow: Only used to read input "parameters" file.
readSurfaceBinary2D(String, int) - Method in class basic.io.Restart: Reads a surface from a (binary) file and it reduces it surface by the given factor.
readSurfaceBinary2D(String) - Method in class basic.io.Restart
readSurfaceText2D(int, int[], String) - Method in class basic.io.Restart
readSurfaceText2D(String) - Method in class basic.io.Restart
RealRecombination - Class in geneticAlgorithm.recombination
RealRecombination() - Constructor for class geneticAlgorithm.recombination.RealRecombination: Each gene of the child will be between the father and mother gene value +-15%.
receiveCommandsLock - Variable in class kineticMonteCarlo.kmcCore.worker.KmcWorker
recombinate(Population, IndividualGroup[]) - Method in class geneticAlgorithm.recombination.DifferentialRecombination: Creates a new offspring population.
recombinate(Population, IndividualGroup[]) - Method in interface geneticAlgorithm.recombination.IRecombination
recombinate(Population, IndividualGroup[]) - Method in class geneticAlgorithm.recombination.RealRecombination: Creates a new offspring population.
recombinate(Integer[]) - Method in class utils.akting.RichArray
recombinate(Integer[]) - Method in class utils.akting.RichMatrix
recombination - Variable in class geneticAlgorithm.AbstractGeneticAlgorithm
recomputeAdsorptionProbability(CatalysisAtom) - Method in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
recomputeAdsorptionProbability(ConcertedAtom) - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
recomputeCollection(byte, CatalysisAtom, double) - Method in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
recomputeCollection(byte, ConcertedAtom, double) - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
recomputeConcertedDiffusionProbability(ConcertedAtom) - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc: Doesn't work yet!!
recomputeDesorptionProbability(CatalysisAtom) - Method in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
recomputeDiffusionProbability(CatalysisAtom) - Method in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
recomputeDiffusionProbability(ConcertedAtom) - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
recomputeMultiAtomProbability(ConcertedAtom) - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
recomputeReactionProbability(CatalysisAtom) - Method in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
recomputeTotalRate(byte) - Method in class utils.list.atoms.AtomsArrayList
recomputeTotalRate(byte) - Method in class utils.list.atoms.AtomsAvlTree
recomputeTotalRate(byte) - Method in interface utils.list.atoms.IAtomsCollection
RED - Static variable in class graphicInterfaces.growth.KmcCanvas
red0 - Variable in class kineticMonteCarlo.unitCell.SiUnitCell
red1 - Variable in class kineticMonteCarlo.unitCell.SiUnitCell
red2 - Variable in class kineticMonteCarlo.unitCell.SiUnitCell
red3 - Variable in class kineticMonteCarlo.unitCell.SiUnitCell
redrawPSD() - Method in class graphicInterfaces.surfaceViewer2D.Frame2D
redrawPSD() - Method in interface graphicInterfacesCommon.surfaceViewer2D.IFrame2D
reducedMass - Variable in class ratesLibrary.CatalysisRates
reentranceCount - Variable in class kineticMonteCarlo.lattice.perimeterStatistics.AbstractPerimeterStatistics
reevaluate() - Method in class geneticAlgorithm.GeneticAlgorithm: Sometimes it is good to reevaluate the whole population.
reevaluate() - Method in class geneticAlgorithm.GeneticAlgorithmDcmaEs: There is no need to reevaluate with DCMA-ES.
reevaluate() - Method in interface geneticAlgorithm.IGeneticAlgorithm
regressions - Variable in class kineticMonteCarlo.lattice.CatalysisLattice
Reinsert(Population, Population, int) - Method in class geneticAlgorithm.reinsertion.ElitistAllReinsertion: The offspring individual is accepted if its error is lower than the corresponding original error
Reinsert(Population, Population, int) - Method in class geneticAlgorithm.reinsertion.ElitistReinsertion
Reinsert(Population, Population, int) - Method in interface geneticAlgorithm.reinsertion.IReinsertion
reinsertion - Variable in class geneticAlgorithm.AbstractGeneticAlgorithm
remainingHopsMap - Variable in class kineticMonteCarlo.kmcCore.growth.devitaAccelerator.DevitaAccelerator
removalsSinceLastCleanup - Variable in class utils.list.AbstractList
remove() - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
remove() - Method in class kineticMonteCarlo.atom.BasicAtom
remove() - Method in interface kineticMonteCarlo.atom.IAtom
remove() - Method in class kineticMonteCarlo.atom.SiAtom
remove(T) - Method in class utils.list.atoms.AtomsArrayList
remove(T) - Method in class utils.list.atoms.AtomsAvlTree
remove(T) - Method in interface utils.list.atoms.IAtomsCollection
remove() - Method in class utils.list.BinnedListIterator
remove1st() - Method in class kineticMonteCarlo.atom.BasicAtom
remove1st() - Method in class kineticMonteCarlo.atom.SiAtom
remove1stNeighbour(GrapheneAtom) - Method in class kineticMonteCarlo.lattice.GrapheneLattice
remove1stOccupiedNeighbour(GrapheneAtom) - Method in class kineticMonteCarlo.lattice.GrapheneLatticeSimple: Computes the removal of one mobile atom.
remove2nd() - Method in class kineticMonteCarlo.atom.SiAtom
remove2ndNeighbour(GrapheneAtom) - Method in class kineticMonteCarlo.lattice.GrapheneLattice
remove3rdNeighbour(GrapheneAtom) - Method in class kineticMonteCarlo.lattice.GrapheneLattice
removeAtom(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.Island
removeAtomRate(T) - Method in class utils.list.atoms.AtomsArrayList
removeAtomRate(T) - Method in class utils.list.atoms.AtomsAvlTree: Removes atom's rate from the tree, with its old rate and sets to zero.
removeAtomRate(Node<T>, T) - Method in class utils.list.atoms.AtomsAvlTree
removeAtomRate(T) - Method in interface utils.list.atoms.IAtomsCollection: Removes atom's rate, with its old desorption rate and sets to zero.
removed - Variable in class kineticMonteCarlo.atom.AbstractAtom
removeImmobilAddMobile(AgAtom) - Method in class kineticMonteCarlo.lattice.AgLattice
removeMobileAddImmobile(AgAtom, boolean) - Method in class kineticMonteCarlo.lattice.AgLattice
removeMobileOccupied(AgAtom) - Method in class kineticMonteCarlo.lattice.AgLattice: Computes the removal of one mobile atom.
removeMobileOccupied(AgAtom) - Method in class kineticMonteCarlo.lattice.AgUcLatticeSimple: Computes the removal of one mobile atom.
removeMultiAtom(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.AbstractGrowthLattice
removeMultiAtomNumber(int) - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
removeMultiAtomNumber(int) - Method in class kineticMonteCarlo.atom.AbstractGrowthAtomAttributes
removeMultiAtoms() - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom: Removes all multi atoms that current atoms belonged to.
removeMultiAtoms() - Method in class kineticMonteCarlo.atom.AbstractGrowthAtomAttributes: Removes all multi atoms that current atoms belonged to.
removeNeighbour(BasicGrowthAtom, int) - Method in class kineticMonteCarlo.lattice.BasicGrowthLattice: Computes the removal of one atom.
removeNeighbour(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.Concerted6LatticeSimple: Computes the removal of one mobile atom.
repaintKmc() - Method in class graphicInterfaces.growth.GrowthKmcFrame
repaintKmc() - Method in interface graphicInterfacesCommon.growth.IGrowthKmcFrame
repeats - Variable in class geneticAlgorithm.evaluationFunctions.AbstractPsdEvaluator
repetitions - Variable in class basic.Parser
REPLICATE_GENE - Static variable in class geneticAlgorithm.restrictions.GeneRestriction
ReplicatedGeneRestriction - Class in geneticAlgorithm.restrictions
ReplicatedGeneRestriction(int, int) - Constructor for class geneticAlgorithm.restrictions.ReplicatedGeneRestriction
repmat(RichArray, int) - Static method in class utils.akting.RichMatrix
reset() - Method in class basic.io.Restart
reset() - Method in class kineticMonteCarlo.kmcCore.AbstractKmc: Resets the lattice and the list of atoms.
reset() - Method in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
reset() - Method in class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
reset() - Method in class kineticMonteCarlo.kmcCore.growth.ActivationEnergy
reset() - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
reset() - Method in interface kineticMonteCarlo.kmcCore.IKmc
reset() - Method in class kineticMonteCarlo.lattice.AbstractGrowthLattice
reset() - Method in class kineticMonteCarlo.lattice.AbstractLattice
reset() - Method in class kineticMonteCarlo.lattice.BasicLattice
reset() - Method in class kineticMonteCarlo.lattice.CatalysisLattice
reset() - Method in class kineticMonteCarlo.lattice.SiLattice
reset() - Method in class utils.list.AbstractList
reset() - Method in class utils.list.atoms.AtomsArrayList
reset() - Method in class utils.list.atoms.AtomsAvlTree: Empties current tree.
reset(Node) - Method in class utils.list.atoms.AtomsAvlTree
reset() - Method in interface utils.list.atoms.IAtomsCollection: Used to empty the collection.
reset() - Method in class utils.list.BinnedList
reset() - Method in class utils.list.LinearList
reset() - Method in class utils.psdAnalysis.PsdSignature2D
resetCatalysis() - Method in class basic.io.Restart
resetKmcError() - Method in class geneticAlgorithm.evaluationFunctions.AbstractPsdEvaluator
resetOccupied() - Method in class kineticMonteCarlo.lattice.AbstractGrowthLattice: Resets to zero the number of occupied locations.
resetPerimeter() - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
resetProbability() - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
resetRemovalsSinceLastCleanup() - Method in class utils.list.AbstractList
resetTime() - Method in class utils.list.AbstractList: Method to set time to zero.
restart - Variable in class basic.AbstractSimulation
Restart - Class in basic.io
Restart() - Constructor for class basic.io.Restart
Restart(String) - Constructor for class basic.io.Restart
Restart(boolean, boolean) - Constructor for class basic.io.Restart: Creates a restart object to be used to write extra data files.
Restart(boolean, String) - Constructor for class basic.io.Restart
restart - Variable in class basic.Parser: Restart object to read "parameters" file.
restart - Variable in class graphicInterfaces.growth.KmcCanvas
restart - Variable in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
restart - Variable in class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
restart - Variable in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
restart - Variable in class kineticMonteCarlo.lattice.perimeterStatistics.Statistics
restart - Variable in class utils.psdAnalysis.PsdSignature2D
restartFolderName - Variable in class basic.AbstractSimulation
RestartLow - Class in basic.io: Class responsible to do the actual writings and readings.
RestartLow() - Constructor for class basic.io.RestartLow
restrictGene(Individual) - Method in class geneticAlgorithm.restrictions.BoundedGeneRestriction
restrictGene(Individual) - Method in class geneticAlgorithm.restrictions.FixedGeneRestriction
restrictGene(Individual) - Method in class geneticAlgorithm.restrictions.GeneRestriction
restrictGene(Individual) - Method in class geneticAlgorithm.restrictions.ReplicatedGeneRestriction
restriction - Variable in class geneticAlgorithm.AbstractGeneticAlgorithm
RestrictionOperator - Class in geneticAlgorithm.restrictions
RestrictionOperator() - Constructor for class geneticAlgorithm.restrictions.RestrictionOperator
resultPsd - Variable in class geneticAlgorithm.evaluationFunctions.BasicGrowthPsdEvaluator.Runner
resumeIcon - Variable in class graphicInterfaces.growth.GrowthKmcFrame
returnProbArray(double[]) - Method in class kineticMonteCarlo.atom.ArrayStack
Ri_DeltaI - Variable in class utils.list.LinearList
RichArray - Class in utils.akting
RichArray(int) - Constructor for class utils.akting.RichArray
RichArray(double[]) - Constructor for class utils.akting.RichArray
RichArray(int, double) - Constructor for class utils.akting.RichArray
RichArray(Individual) - Constructor for class utils.akting.RichArray
richArray - Variable in class utils.akting.RichArrayComparator
RichArrayComparator - Class in utils.akting
RichArrayComparator(RichArray) - Constructor for class utils.akting.RichArrayComparator
RichMatrix - Class in utils.akting
RichMatrix(int) - Constructor for class utils.akting.RichMatrix
RichMatrix(double[][]) - Constructor for class utils.akting.RichMatrix
RichMatrix(Population) - Constructor for class utils.akting.RichMatrix
right - Variable in class utils.list.Node
rluxdef() - Method in class utils.edu.cornell.lassp.houle.rngPack.Ranlux
rluxgo(int, int) - Method in class utils.edu.cornell.lassp.houle.rngPack.Ranlux
rng - Variable in class utils.edu.cornell.lassp.houle.rngPack.RandomSynchronized
root - Variable in class utils.list.atoms.AvlTree
rotateLeft(Node<T>) - Method in class utils.list.atoms.AvlTree
rotateRight(Node<T>) - Method in class utils.list.atoms.AvlTree
rotation - Variable in class kineticMonteCarlo.unitCell.SiUnitCell
RoundPerimeter - Class in kineticMonteCarlo.kmcCore.growth
RoundPerimeter(String) - Constructor for class kineticMonteCarlo.kmcCore.growth.RoundPerimeter
RoundPerimeter(String, short) - Constructor for class kineticMonteCarlo.kmcCore.growth.RoundPerimeter
run() - Method in class basic.AbstractGrowthSimulation.PaintLoop
run() - Method in class basic.AbstractGrowthSimulation.TerminalLoop
run() - Method in class geneticAlgorithm.AbstractGeneticAlgorithm.Updater: Every 100 ms updates the interface with the current progress.
run() - Method in class geneticAlgorithm.evaluationFunctions.BasicGrowthPsdEvaluator.Runner: Every 100 ms updates the interface with the current progress.
run() - Method in class graphicInterfaces.gaConvergence.GaProgressFrame.ProgressUpdater
run() - Method in class kineticMonteCarlo.kmcCore.worker.KmcWorker
run() - Method in class samples.agAgGrowth.SimpleAgAgGrowthKmcSimulation.paintLoop
run() - Method in class samples.grapheneCvdGrowth.SimpleGrapheneKmcSimulation.paintLoop
run() - Method in class utils.printByHandHelper.paintLoop
Runner() - Constructor for class geneticAlgorithm.evaluationFunctions.BasicGrowthPsdEvaluator.Runner


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