kineticMonteCarlo.lattice

Class Concerted6LatticeSimple

java.lang.Object

kineticMonteCarlo.lattice.AbstractLattice

kineticMonteCarlo.lattice.AbstractGrowthLattice

kineticMonteCarlo.lattice.AgLattice

kineticMonteCarlo.lattice.AgUcLattice

kineticMonteCarlo.lattice.AgUcLatticeSimple

kineticMonteCarlo.lattice.Concerted6LatticeSimple

All Implemented Interfaces:

IDevitaLattice

public class Concerted6LatticeSimple
extends AgUcLatticeSimple

Author:

J. Alberdi-Rodriguez

Field Summary

Fields inherited from class kineticMonteCarlo.lattice.AbstractGrowthLattice

Y_RATIO

Constructor Summary

Constructors

Constructor and Description
Concerted6LatticeSimple(int hexaSizeI, int hexaSizeJ, ModifiedBuffer modified, HopsPerStep distancePerStep)

Method Summary

Modifier and Type	Method and Description
private void	addNeighbour(AbstractGrowthAtom neighbourAtom) Éste lo ejecutan los primeros vecinos
void	deposit(AbstractGrowthAtom atom, boolean forceNucleation)
double	extract(AbstractGrowthAtom atom) Extract the given atom from the lattice.
private void	removeNeighbour(AbstractGrowthAtom neighbourAtom) Computes the removal of one mobile atom.

Methods inherited from class kineticMonteCarlo.lattice.AgUcLattice

changeOccupationByHand, getAtom, getAtom, getAvailableDistance, getCartSizeX, getCartSizeY, getCentralAtom, getCentralCartesianLocation, getCoverage, getFarSite, getUc, getUc, size

Methods inherited from class kineticMonteCarlo.lattice.AgLattice

getCartesianLocation, getCartX, getCartY, getHexagonalCoordinates, getiHexa, getjHexa, getNeighbour, init

Methods inherited from class kineticMonteCarlo.lattice.AbstractGrowthLattice

addAtom, addBondAtom, addOccupied, countIslands, countPerimeter, getAtom, getAtom, getAtomTypesCounter, getAverageGyradius, getCentreOfMass, getCmDistance, getDistancesToCentre, getDistanceToCenter, getDistanceToCenter, getEmptyTypesCounter, getInnerPerimeterLenght, getIsland, getIslandCount, getIslandIterator, getMobileAtoms, getMonomerCount, getMultiAtom, getMultiAtomCount, getMultiAtomIterator, getMultiAtomsIterator, getOccupied, getOuterPerimeterLenght, getTotalHops, getTracerDistance, identifyAddMultiAtom, identifyIsland, identifyRemoveMultiAtomIsland, initialiseRates, printDistances, reset, resetOccupied, setAngles, setAtoms, setAtomsTypesCounter, setInsideCircle, setInsideSquare, subtractOccupied, swapAtomsInMultiAtom, swapIsland

Methods inherited from class kineticMonteCarlo.lattice.AbstractLattice

getHexaSizeI, getHexaSizeJ, getHexaSizeK, getUnitCellSize, isPaused, setHexaSizeI, setHexaSizeJ, setHexaSizeK, setPaused, setProbabilities, setUnitCellSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Concerted6LatticeSimple

public Concerted6LatticeSimple(int hexaSizeI,
                               int hexaSizeJ,
                               ModifiedBuffer modified,
                               HopsPerStep distancePerStep)

Method Detail

deposit

public void deposit(AbstractGrowthAtom atom,
                    boolean forceNucleation)

Overrides:

deposit in class AgUcLatticeSimple

extract

public double extract(AbstractGrowthAtom atom)

Description copied from class: AbstractGrowthLattice

Extract the given atom from the lattice.

Overrides:

extract in class AgUcLatticeSimple

Parameters:

atom - the atom to be extracted.

Returns:

probability change (positive value).

addNeighbour

private void addNeighbour(AbstractGrowthAtom neighbourAtom)

Éste lo ejecutan los primeros vecinos

Parameters:

neighbourAtom - neighbour atom of the original atom

originType - type of the original atom

forceNucleation -

removeNeighbour

private void removeNeighbour(AbstractGrowthAtom neighbourAtom)

Computes the removal of one mobile atom.

Parameters:

neighbourAtom - neighbour atom of the original atom