kineticMonteCarlo.lattice

Class AbstractLattice

java.lang.Object

kineticMonteCarlo.lattice.AbstractLattice

Direct Known Subclasses:

AbstractGrowthLattice, BasicLattice, SiLattice

public abstract class AbstractLattice
extends java.lang.Object

Author:

N. Ferrando, J. Alberdi-Rodriguez

Field Summary

Fields

Modifier and Type	Field and Description
private int	hexaSizeI
private int	hexaSizeJ
private int	hexaSizeK
private boolean	paused
private int	unitCellSize

Constructor Summary

Constructors

Constructor and Description
AbstractLattice()

Method Summary

Modifier and Type	Method and Description
abstract AbstractAtom	getAtom(int i, int j, int k, int unitCellPos) Deprecated.
abstract float	getAverageGyradius() Only defined in growth lattice.
int	getHexaSizeI()
int	getHexaSizeJ()
int	getHexaSizeK()
abstract int	getIslandCount() Only defined in growth lattice.
abstract IUc	getUc(int pos)
int	getUnitCellSize()
boolean	isPaused()
abstract void	reset()
void	setHexaSizeI(int hexaSizeI)
void	setHexaSizeJ(int hexaSizeJ)
void	setHexaSizeK(int hexaSizeK)
void	setPaused(boolean pause)
void	setProbabilities(double[] rates)
void	setUnitCellSize(int unitCellSize)
int	size()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

hexaSizeI

private int hexaSizeI

hexaSizeJ

private int hexaSizeJ

hexaSizeK

private int hexaSizeK

unitCellSize

private int unitCellSize

paused

private boolean paused

Constructor Detail

AbstractLattice

public AbstractLattice()

Method Detail

getHexaSizeI

public final int getHexaSizeI()

getHexaSizeJ

public final int getHexaSizeJ()

getHexaSizeK

public final int getHexaSizeK()

setHexaSizeI

public final void setHexaSizeI(int hexaSizeI)

setHexaSizeJ

public final void setHexaSizeJ(int hexaSizeJ)

setHexaSizeK

public final void setHexaSizeK(int hexaSizeK)

getUnitCellSize

public final int getUnitCellSize()

Returns:

the unitCellSize

setUnitCellSize

public final void setUnitCellSize(int unitCellSize)

Parameters:

unitCellSize - the unitCellSize to set

getAtom

@Deprecated
public abstract AbstractAtom getAtom(int i,
                                                 int j,
                                                 int k,
                                                 int unitCellPos)

Deprecated.

getUc

public abstract IUc getUc(int pos)

setPaused

public void setPaused(boolean pause)

isPaused

public boolean isPaused()

size

public int size()

getIslandCount

public abstract int getIslandCount()

Only defined in growth lattice.

Returns:

number of island of simulation (or -1)

getAverageGyradius

public abstract float getAverageGyradius()

Only defined in growth lattice.

Returns:

average gyradius of all islands (or -1)

reset

public abstract void reset()

setProbabilities

public void setProbabilities(double[] rates)