kineticMonteCarlo.lattice

Class GrapheneLatticeSimple

java.lang.Object

kineticMonteCarlo.lattice.AbstractLattice

kineticMonteCarlo.lattice.AbstractGrowthLattice

kineticMonteCarlo.lattice.GrapheneLattice

kineticMonteCarlo.lattice.GrapheneLatticeSimple

All Implemented Interfaces:

IDevitaLattice

public class GrapheneLatticeSimple
extends GrapheneLattice

Author:

J. Alberdi-Rodriguez

Field Summary

Fields inherited from class kineticMonteCarlo.lattice.AbstractGrowthLattice

Y_RATIO

Constructor Summary

Constructors

Constructor and Description
GrapheneLatticeSimple(int hexaSizeI, int hexaSizeJ, ModifiedBuffer modified, HopsPerStep distancePerStep, java.lang.Class<?> inputClass)

Method Summary

Modifier and Type	Method and Description
private void	add1stOccupiedNeighbour(GrapheneAtom neighbourAtom) Éste lo ejecutan los primeros vecinos
void	deposit(AbstractGrowthAtom a, boolean forceNucleation)
double	extract(AbstractGrowthAtom a) Extrae el átomo de este lugar (pásalo a no occupied y reduce la vecindad de los átomos vecinos, si cambia algún tipo, recalcula probabilidades)
private void	remove1stOccupiedNeighbour(GrapheneAtom neighbourAtom) Computes the removal of one mobile atom.

Methods inherited from class kineticMonteCarlo.lattice.GrapheneLattice

changeOccupationByHand, getAvailableDistance, getCartesianLocation, getCartSizeX, getCartSizeY, getCartX, getCartY, getCentralAtom, getCentralCartesianLocation, getFarSite, getHexaPosI, getHexaPosJ, getiHexa, getjHexa, getNeighbour

Methods inherited from class kineticMonteCarlo.lattice.AbstractGrowthLattice

addAtom, addBondAtom, addOccupied, countIslands, countPerimeter, getAtom, getAtom, getAtom, getAtom, getAtomTypesCounter, getAverageGyradius, getCentreOfMass, getCmDistance, getCoverage, getDistancesToCentre, getDistanceToCenter, getDistanceToCenter, getEmptyTypesCounter, getInnerPerimeterLenght, getIsland, getIslandCount, getIslandIterator, getMobileAtoms, getMonomerCount, getMultiAtom, getMultiAtomCount, getMultiAtomIterator, getMultiAtomsIterator, getOccupied, getOuterPerimeterLenght, getTotalHops, getTracerDistance, getUc, getUc, identifyAddMultiAtom, identifyIsland, identifyRemoveMultiAtomIsland, initialiseRates, printDistances, reset, resetOccupied, setAngles, setAtoms, setAtomsTypesCounter, setInsideCircle, setInsideSquare, size, subtractOccupied, swapAtomsInMultiAtom, swapIsland

Methods inherited from class kineticMonteCarlo.lattice.AbstractLattice

getHexaSizeI, getHexaSizeJ, getHexaSizeK, getUnitCellSize, isPaused, setHexaSizeI, setHexaSizeJ, setHexaSizeK, setPaused, setProbabilities, setUnitCellSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GrapheneLatticeSimple

public GrapheneLatticeSimple(int hexaSizeI,
                             int hexaSizeJ,
                             ModifiedBuffer modified,
                             HopsPerStep distancePerStep,
                             java.lang.Class<?> inputClass)

Method Detail

deposit

public void deposit(AbstractGrowthAtom a,
                    boolean forceNucleation)

Overrides:

deposit in class GrapheneLattice

Parameters:

a - atom to deposit.

forceNucleation - ignored.

extract

public double extract(AbstractGrowthAtom a)

Description copied from class: GrapheneLattice

Extrae el átomo de este lugar (pásalo a no occupied y reduce la vecindad de los átomos vecinos, si cambia algún tipo, recalcula probabilidades)

Overrides:

extract in class GrapheneLattice

Parameters:

a - atom to be extracted.

Returns:

the previous probability of the extracted atom (in positive).

add1stOccupiedNeighbour

private void add1stOccupiedNeighbour(GrapheneAtom neighbourAtom)

Éste lo ejecutan los primeros vecinos

Parameters:

neighbourAtom - neighbour atom of the original atom

originType - type of the original atom

forceNucleation -

remove1stOccupiedNeighbour

private void remove1stOccupiedNeighbour(GrapheneAtom neighbourAtom)

Computes the removal of one mobile atom.

Parameters:

neighbourAtom - neighbour atom of the original atom