- u - Variable in class utils.edu.cornell.lassp.houle.rngPack.Ranmar
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- ucArray - Variable in class kineticMonteCarlo.lattice.AbstractGrowthLattice
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Unit cell array, where all the atoms are located.
- ucArray - Variable in class kineticMonteCarlo.lattice.AgUcLattice
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Unit cell array.
- ucList - Variable in class kineticMonteCarlo.lattice.AgUcLattice
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Unit cell list.
- ucList - Variable in class kineticMonteCarlo.lattice.BasicLattice
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- ucList - Variable in class kineticMonteCarlo.lattice.SiLattice
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- uniform(double, double) - Method in class utils.edu.cornell.lassp.houle.rngPack.RandomElement
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- unitCell - Variable in class kineticMonteCarlo.lattice.SiLattice
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- unitCellSize - Variable in class kineticMonteCarlo.lattice.AbstractLattice
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- unoccupiedEdgeTwoTerraces() - Method in class kineticMonteCarlo.atom.AgAtomSimple
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It has two neighbours.
- unoccupiedKinkThreeTerraces() - Method in class kineticMonteCarlo.atom.AgAtomSimple
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It has three neighbours.
- unRemove() - Method in class kineticMonteCarlo.atom.AbstractAtom
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- unRemove() - Method in interface kineticMonteCarlo.atom.IAtom
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- update(AbstractKmc) - Method in class graphicInterfaces.etching.SiFrame
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- update(ArrayList<AbstractAtom>) - Method in class kineticMonteCarlo.kmcCore.growth.ActivationEnergy
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- update(double, double) - Method in class kineticMonteCarlo.lattice.Island
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Updates the average and max distances.
- updateAllNeighbours(AbstractGrowthAtom, AbstractList) - Method in class kineticMonteCarlo.atom.ModifiedBuffer
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- updateAllRates(AbstractGrowthAtom, AbstractList) - Method in class kineticMonteCarlo.atom.ModifiedBuffer
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- updateAtoms(AbstractList) - Method in class kineticMonteCarlo.atom.ModifiedBuffer
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Update rates list with the current modified atoms list.
- updateAvg(double) - Method in class kineticMonteCarlo.lattice.Island
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- updateBuffers(float[]) - Method in class graphicInterfaces.etching.SiPointArray
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- updateCoCus(CatalysisAtom) - Method in class kineticMonteCarlo.lattice.CatalysisLattice
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Check whether two CO^CUS atoms are together.
- updateCurrentList() - Method in class utils.list.BinnedList
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- updateCurrentProgress() - Method in class basic.AbstractSimulation
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- updateDesiredHopDistances(int, int, int) - Method in class kineticMonteCarlo.kmcCore.growth.devitaAccelerator.DevitaAccelerator
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- updateMax(double) - Method in class kineticMonteCarlo.lattice.Island
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- updateN1FromScratch() - Method in class kineticMonteCarlo.atom.BasicAtom
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This was updateTypeFromScratch().
- updateN1FromScratch() - Method in class kineticMonteCarlo.atom.SiAtom
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- updateN2FromScratch() - Method in class kineticMonteCarlo.atom.SiAtom
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- updateOneBound(int) - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
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- updateOneBound(int) - Method in class kineticMonteCarlo.atom.AgAtom
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- updateOneBound(int) - Method in class kineticMonteCarlo.atom.BasicGrowthAtom
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- updateOneBound(int) - Method in class kineticMonteCarlo.atom.CatalysisAtom
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- updateOneBound(int) - Method in class kineticMonteCarlo.atom.GrapheneAtom
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- updatePossibles(CatalysisLattice, double, boolean) - Method in class kineticMonteCarlo.kmcCore.growth.ActivationEnergy
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Computes possibles for catalysis for all kind of processes
- updatePossibles(Iterator<CatalysisAtom>, double, boolean) - Method in class kineticMonteCarlo.kmcCore.growth.ActivationEnergy
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Computes possibles for catalysis.
- updatePossibles(Iterator<AbstractAtom>, double, double) - Method in class kineticMonteCarlo.kmcCore.growth.ActivationEnergy
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- updatePossibles() - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
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- updatePossiblesIslands(Iterator<Island>, double, double) - Method in class kineticMonteCarlo.kmcCore.growth.ActivationEnergy
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- updatePossiblesMultiAtoms(Iterator<MultiAtom>, double, double) - Method in class kineticMonteCarlo.kmcCore.growth.ActivationEnergy
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- updateProgressBar(int) - Method in class graphicInterfaces.growth.GrowthKmcFrame
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Updates the progress bar of the bottom of the frame.
- updateProgressBar(int) - Method in interface graphicInterfacesCommon.growth.IGrowthKmcFrame
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- updater - Variable in class geneticAlgorithm.AbstractGeneticAlgorithm
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- Updater() - Constructor for class geneticAlgorithm.AbstractGeneticAlgorithm.Updater
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- updater - Variable in class graphicInterfaces.gaConvergence.GaProgressFrame
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- updateRate() - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
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If current atom is not eligible (thus, is immobile) return its probability in negative.
- updateRate(T, double) - Method in class utils.list.atoms.AtomsArrayList
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Updates total rate.
- updateRate(T, double) - Method in class utils.list.atoms.AtomsAvlTree
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Method to update rates from root to an atom.
- updateRate(Node<T>, T, double) - Method in class utils.list.atoms.AtomsAvlTree
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- updateRate(T, double) - Method in interface utils.list.atoms.IAtomsCollection
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- updateRateFromList(byte) - Method in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
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- updateRateFromList(byte) - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
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- updateRates(CatalysisAtom) - Method in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
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Updates total adsorption, desorption, reaction and diffusion probabilities.
- updateRates(Set<ConcertedAtom>) - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
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Updates total adsorption and diffusion probabilities.
- updateRatesIslands(ConcertedAtom, ConcertedAtom, boolean) - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
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- updateRemainingHops(int, int) - Method in class kineticMonteCarlo.kmcCore.growth.devitaAccelerator.DevitaAccelerator
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- updateSecondNeighbour(BasicGrowthAtom) - Method in class kineticMonteCarlo.lattice.BasicGrowthLattice
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- updateSuccess(int, int) - Method in class kineticMonteCarlo.kmcCore.growth.ActivationEnergy
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- UPPER_MASK - Static variable in class utils.edu.cornell.lassp.houle.rngPack.RanMT
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- useCatalysisTree(byte) - Method in class basic.Parser
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Instead of writing "true", one can use the word "tree" to use a tree to store catalysis
processes.
- useDevita() - Method in class basic.Parser
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Devita accelerator makes execution much faster, it may change results a bit.
- useMaxPerimeter - Variable in class basic.Parser
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- useMaxPerimeter() - Method in class basic.Parser
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- useMaxPerimeter - Variable in class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
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- utils - package utils
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- utils.akting - package utils.akting
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- utils.akting.operations - package utils.akting.operations
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- utils.akting.tests - package utils.akting.tests
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- utils.edu.cornell.lassp.houle.rngPack - package utils.edu.cornell.lassp.houle.rngPack
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- utils.list - package utils.list
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- utils.list.atoms - package utils.list.atoms
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- utils.psdAnalysis - package utils.psdAnalysis
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- uvec - Variable in class utils.edu.cornell.lassp.houle.rngPack.Ranmar
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