- M - Static variable in class utils.edu.cornell.lassp.houle.rngPack.RanMT
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- mag01 - Variable in class utils.edu.cornell.lassp.houle.rngPack.RanMT
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- magnitude() - Method in class javafx.geometry.Point3D
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Computes magnitude (length) of the relative magnitude vector represented
by this instance.
- main - package main
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- main(String[]) - Static method in class main.Morphokinetics
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- main(String[]) - Static method in class main.printByHand
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- main(String[]) - Static method in class samples.agAgGrowth.AgAgMultithreadedEvaluatorTest
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- main(String[]) - Static method in class samples.agAgGrowth.AgAgPsdTest
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- main(String[]) - Static method in class samples.agAgGrowth.SimpleAgAgGrowthKmcSimulation
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- main(String[]) - Static method in class samples.basic.SimpleBasicKmcSimulation
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- main(String[]) - Static method in class samples.convergences.agAgGrowth.AgAgKmcConvergence
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- main(String[]) - Static method in class samples.convergences.agAgGrowth.AgAgKmcConvergenceDcmaEs
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- main(String[]) - Static method in class samples.convergences.siEtching.SiEtchingKmcConvergence
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- main(String[]) - Static method in class samples.grapheneCvdGrowth.SimpleGrapheneKmcSimulation
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- main(String[]) - Static method in class samples.silicon.SiliconMultithreadedPsdCalculation
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- main(String[]) - Static method in class samples.silicon.SiliconPsdDifferencesBetweenTemperatures
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- main(String[]) - Static method in class samples.silicon.SimpleSiliconKmcFftAnalisys
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- main(String[]) - Static method in class samples.silicon.SimpleSiliconKmcSimulation
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- main(String[]) - Static method in class samples.worker.SimpleKmcSimulationWithWorker
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- main(String[]) - Static method in class utils.akting.RichMatrix
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- main(String[]) - Static method in class utils.edu.cornell.lassp.houle.rngPack.RandomApp
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- mainEvaluator - Variable in class geneticAlgorithm.AbstractGeneticAlgorithm
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- mainGrowPanel - Variable in class graphicInterfaces.MainInterface
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- mainInterface - Variable in class geneticAlgorithm.AbstractGeneticAlgorithm
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- MainInterface - Class in graphicInterfaces
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- MainInterface(KmcCanvas) - Constructor for class graphicInterfaces.MainInterface
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- mainPanel - Variable in class graphicInterfaces.MainInterface
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- mainPanel - Variable in class graphicInterfaces.surfaceViewer2D.SurfaceViewerPanel2D
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- mainScroll - Variable in class graphicInterfaces.MainInterface
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- manyMilliSec(long) - Static method in class utils.Wait
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Waits given milliseconds
- manySec(long) - Static method in class utils.Wait
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Waits given seconds
- mass - Variable in class ratesLibrary.CatalysisRates
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Mass of molecule (kg/molecule).
- MathUtils - Class in utils
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- MathUtils() - Constructor for class utils.MathUtils
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- MATRIX_A - Static variable in class utils.edu.cornell.lassp.houle.rngPack.RanMT
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- max - Variable in class graphicInterfaces.surfaceViewer2D.Panel2D
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- MAX - Variable in class kineticMonteCarlo.lattice.CatalysisLattice
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- max(RichArray, RichArray) - Static method in class utils.akting.RichArray
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- max() - Method in class utils.akting.RichArray
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- MAX_DIMS - Static variable in class basic.io.Restart
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- MAX_POINTS - Static variable in class graphicInterfaces.etching.SiPointArray
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- maxAccumulatedSteps - Variable in class kineticMonteCarlo.kmcCore.growth.devitaAccelerator.DevitaHopsConfig
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- maxCoverage - Variable in class graphicInterfaces.growth.GrowthKmcFrame
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- maxCoverage - Variable in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
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This attribute defines which is the maximum coverage for a multi-flake simulation.
- maxCoverage - Variable in class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
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This attribute defines which is the maximum coverage for a multi-flake simulation.
- maxCoverage - Variable in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
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This attribute defines which is the maximum coverage for a multi-flake simulation.
- maxDistance - Variable in class kineticMonteCarlo.lattice.Island
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- maxDistanceHops - Variable in class kineticMonteCarlo.kmcCore.growth.devitaAccelerator.DevitaHopsConfig
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- maxLabel - Variable in class graphicInterfaces.surfaceViewer2D.SurfaceViewerPanel2D
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- maxlev - Static variable in class utils.edu.cornell.lassp.houle.rngPack.Ranlux
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Maximum luxury level: maxlev=4
- maxRadius - Variable in class kineticMonteCarlo.lattice.perimeterStatistics.AbstractPerimeterStatistics
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- maxSteps - Variable in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
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- maxSteps - Variable in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
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- maxTextField - Variable in class graphicInterfaces.surfaceViewer2D.SurfaceViewerPanel2D
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- maxValue - Variable in class geneticAlgorithm.restrictions.BoundedGeneRestriction
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- maxValueGene - Variable in class basic.Parser
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Maximum possible value that a gene can have.
- maxValueGene - Variable in class geneticAlgorithm.AbstractGeneticAlgorithm
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- maxX - Variable in class graphicInterfaces.gaConvergence.ErrorPanel
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- maxY - Variable in class graphicInterfaces.gaConvergence.ErrorPanel
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- measureInterval - Variable in class geneticAlgorithm.evaluationFunctions.AbstractPsdEvaluator
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- measures - Variable in class utils.psdAnalysis.PsdSignature2D
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- MenuItemHandler() - Constructor for class graphicInterfaces.growth.GrowthKmcFrame.MenuItemHandler
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- mergeIslands() - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
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- midpoint(double, double, double) - Method in class javafx.geometry.Point3D
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Returns a point which lies in the middle between this point and the
specified coordinates.
- midpoint(Point3D) - Method in class javafx.geometry.Point3D
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Returns a point which lies in the middle between this point and the
specified point.
- millerX - Variable in class basic.Parser
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- millerY - Variable in class basic.Parser
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- millerZ - Variable in class basic.Parser
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- min - Variable in class graphicInterfaces.surfaceViewer2D.Panel2D
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- min(RichArray, RichArray) - Static method in class utils.akting.RichArray
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- min() - Method in class utils.akting.RichArray
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- minAccumulatedSteps - Variable in class kineticMonteCarlo.kmcCore.growth.devitaAccelerator.DevitaHopsConfig
-
- minDistanceHops - Variable in class kineticMonteCarlo.kmcCore.growth.devitaAccelerator.DevitaHopsConfig
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- minHeight - Variable in class kineticMonteCarlo.kmcCore.etching.BasicKmc
-
- minHeight - Variable in class kineticMonteCarlo.kmcCore.etching.SiKmc
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- minLabel - Variable in class graphicInterfaces.surfaceViewer2D.SurfaceViewerPanel2D
-
- minRadius - Variable in class kineticMonteCarlo.lattice.perimeterStatistics.AbstractPerimeterStatistics
-
- minTextField - Variable in class graphicInterfaces.surfaceViewer2D.SurfaceViewerPanel2D
-
- minValue - Variable in class geneticAlgorithm.restrictions.BoundedGeneRestriction
-
- minValueGene - Variable in class basic.Parser
-
Minimum possible value that a gene can have.
- minValueGene - Variable in class geneticAlgorithm.AbstractGeneticAlgorithm
-
- minY - Variable in class graphicInterfaces.gaConvergence.ErrorPanel
-
- mkount - Variable in class utils.edu.cornell.lassp.houle.rngPack.Ranlux
-
- mobileAtoms - Variable in class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
- mod(int, int) - Static method in class utils.MathUtils
-
- modified - Variable in class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
- ModifiedBuffer - Class in kineticMonteCarlo.atom
-
- ModifiedBuffer() - Constructor for class kineticMonteCarlo.atom.ModifiedBuffer
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- modifiedBuffer - Variable in class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
-
- monomerCount - Variable in class kineticMonteCarlo.lattice.AbstractGrowthLattice
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- Morphokinetics - Class in main
-
Morphokinetics is a software to simulate kinetics Monte Carlo (KMC) processes.
- Morphokinetics() - Constructor for class main.Morphokinetics
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- MouseRocking - Class in graphicInterfaces.etching.mouseBehaviors
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- MouseRocking(TransformGroup) - Constructor for class graphicInterfaces.etching.mouseBehaviors.MouseRocking
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- MouseRocking() - Constructor for class graphicInterfaces.etching.mouseBehaviors.MouseRocking
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- MouseRocking(int) - Constructor for class graphicInterfaces.etching.mouseBehaviors.MouseRocking
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- MouseRotate - Class in graphicInterfaces.etching.mouseBehaviors
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- MouseRotate(TransformGroup) - Constructor for class graphicInterfaces.etching.mouseBehaviors.MouseRotate
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- MouseRotate() - Constructor for class graphicInterfaces.etching.mouseBehaviors.MouseRotate
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- MouseRotate(int) - Constructor for class graphicInterfaces.etching.mouseBehaviors.MouseRotate
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- MouseTranslate - Class in graphicInterfaces.etching.mouseBehaviors
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- MouseTranslate(float) - Constructor for class graphicInterfaces.etching.mouseBehaviors.MouseTranslate
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- mouseX - Variable in class graphicInterfaces.growth.GrowthKmcFrame
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- mouseX - Variable in class graphicInterfaces.MainInterface
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- mouseY - Variable in class graphicInterfaces.growth.GrowthKmcFrame
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- mouseY - Variable in class graphicInterfaces.MainInterface
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- MouseZoom - Class in graphicInterfaces.etching.mouseBehaviors
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- MouseZoom(TransformGroup) - Constructor for class graphicInterfaces.etching.mouseBehaviors.MouseZoom
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Creates a zoom behavior given the transform group.
- MouseZoom() - Constructor for class graphicInterfaces.etching.mouseBehaviors.MouseZoom
-
Creates a default mouse zoom behavior.
- MouseZoom(int) - Constructor for class graphicInterfaces.etching.mouseBehaviors.MouseZoom
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Creates a zoom behavior.
- moved - Variable in class graphicInterfaces.etching.mouseBehaviors.MouseTranslate
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- moveIsland(Island, int) - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
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Moves an island and recomputes all the neighbourhood.
- moveMultiAtom(MultiAtom, int) - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
-
A copy of moveIsland(): Moves an island and recomputes all the neighbourhood.
- mt - Variable in class utils.edu.cornell.lassp.houle.rngPack.RanMT
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- mti - Variable in class utils.edu.cornell.lassp.houle.rngPack.RanMT
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- mu - Variable in class geneticAlgorithm.recombination.DifferentialRecombination
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Number of parents for recombination in CMA-ES.
- mu - Variable in class ratesLibrary.CatalysisRates
-
Chemical potential (eV).
- muEffective - Variable in class geneticAlgorithm.recombination.DifferentialRecombination
-
Variance effective selection mass.
- MULTI - Static variable in class kineticMonteCarlo.process.ConcertedProcess
-
- MultiAtom - Class in kineticMonteCarlo.lattice
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- MultiAtom(int) - Constructor for class kineticMonteCarlo.lattice.MultiAtom
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- MultiAtom(Island) - Constructor for class kineticMonteCarlo.lattice.MultiAtom
-
- multiAtomEnergies - Variable in class ratesLibrary.concerted.AbstractConcertedRates
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- multiAtomMi - Variable in class graphicInterfaces.growth.GrowthKmcFrame
-
- multiAtomNumberSet - Variable in class kineticMonteCarlo.atom.AbstractGrowthAtomAttributes
-
If current atom can move along with another atom inside an island, otherwise is 0.
- MultiAtomProcess - Class in kineticMonteCarlo.process
-
MultiAtom can diffuse in a certain direction.
- MultiAtomProcess() - Constructor for class kineticMonteCarlo.process.MultiAtomProcess
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- multiAtomsIndex - Variable in class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
- multiAtomsMap - Variable in class kineticMonteCarlo.lattice.AbstractGrowthLattice
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- multiplier - Variable in class kineticMonteCarlo.atom.AbstractGrowthAtom
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- multiply(double) - Method in class javafx.geometry.Point3D
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Returns a point with the coordinates of this point multiplied
by the specified factor
- multiply(double) - Static method in class utils.akting.operations.OperationFactory
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- multiply(RichArray) - Method in class utils.akting.RichArray
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- multiply(RichMatrix) - Method in class utils.akting.RichArray
-
- multiply(RichArray) - Method in class utils.akting.RichMatrix
-
- multiply(RichMatrix) - Method in class utils.akting.RichMatrix
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- MultiplyOperation - Class in utils.akting.operations
-
- MultiplyOperation(double) - Constructor for class utils.akting.operations.MultiplyOperation
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- multithreaded - Variable in class basic.Parser
-
- MultithreadedPsdEvaluator - Class in geneticAlgorithm.evaluationFunctions
-
- MultithreadedPsdEvaluator(int, int, int, Set) - Constructor for class geneticAlgorithm.evaluationFunctions.MultithreadedPsdEvaluator
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- mutate(Population, List) - Method in class geneticAlgorithm.mutation.BgaBasedMutator
-
- mutate(Population, List) - Method in class geneticAlgorithm.mutation.CrossoverMutator
-
- mutate(Population, List) - Method in interface geneticAlgorithm.mutation.IMutation
-
- mutation - Variable in class geneticAlgorithm.AbstractGeneticAlgorithm
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- mutRate - Variable in class geneticAlgorithm.mutation.BgaBasedMutator
-
mutation rate as percentage
- myEvaluate(Population) - Method in class geneticAlgorithm.GeneticAlgorithmDcmaEs
-