- Eaa - Variable in class ratesLibrary.AgRatesFromPrbCox
-
Energy from edge A to edge A
- Eacb - Variable in class ratesLibrary.AgRatesFromPrbCox
-
Energy from edge A to edge B, across corner
- Eack - Variable in class ratesLibrary.AgRatesFromPrbCox
-
Energy from edge A to kink, across corner
- Ebb - Variable in class ratesLibrary.AgRatesFromPrbCox
-
Energy from edge B to edge B
- Ebca - Variable in class ratesLibrary.AgRatesFromPrbCox
-
Energy from edge B to edge A, across corner
- Ebck - Variable in class ratesLibrary.AgRatesFromPrbCox
-
Energy from edge B to kink, across corner
- Eca - Variable in class ratesLibrary.AgRatesFromPrbCox
-
Energy from corner to edge A
- Ecak - Variable in class ratesLibrary.AgRatesFromPrbCox
-
Energy from corner to kink A
- Ecb - Variable in class ratesLibrary.AgRatesFromPrbCox
-
Energy from corner to edge B
- Ecbk - Variable in class ratesLibrary.AgRatesFromPrbCox
-
Energy from corner to kink B
- Ecc - Variable in class ratesLibrary.AgRatesFromPrbCox
-
Energy from corner to corner
- Ed - Variable in class ratesLibrary.AgRatesFromPrbCox
-
- EDGE - Static variable in class kineticMonteCarlo.atom.AbstractAtom
-
- EDGE - Static variable in class kineticMonteCarlo.atom.AgAtom
-
- EDGE - Static variable in class kineticMonteCarlo.atom.BasicGrowthAtom
-
- EDGE_A - Static variable in class kineticMonteCarlo.atom.AgAtom
-
- EDGE_B - Static variable in class kineticMonteCarlo.atom.AgAtom
-
- edgeRate - Variable in class kineticMonteCarlo.process.AbstractProcess
-
- eDiff - Variable in class ratesLibrary.GrapheneGaillardRates
-
- eigeneval - Variable in class geneticAlgorithm.recombination.DifferentialRecombination
-
Track update of B and D.
- eInc - Variable in class ratesLibrary.GrapheneGaillardRates
-
- Einf - Variable in class ratesLibrary.AgRatesFromPrbCox
-
Infinite energy.
- eligible - Variable in class kineticMonteCarlo.atom.CatalysisAtom
-
- ElitistAllReinsertion - Class in geneticAlgorithm.reinsertion
-
- ElitistAllReinsertion() - Constructor for class geneticAlgorithm.reinsertion.ElitistAllReinsertion
-
- ElitistReinsertion - Class in geneticAlgorithm.reinsertion
-
- ElitistReinsertion() - Constructor for class geneticAlgorithm.reinsertion.ElitistReinsertion
-
- emptyTypesCounter - Variable in class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
- ENCODING - Static variable in class basic.io.Restart
-
- endTime - Variable in class basic.Parser
-
- endTime - Variable in class kineticMonteCarlo.kmcCore.worker.KmcWorker
-
- energies - Variable in class ratesLibrary.AbstractBasicGrowthRates
-
- energies - Variable in class ratesLibrary.AgRatesFromPrbCox
-
- energies - Variable in class ratesLibrary.AgSimpleRates
-
- energies - Variable in class ratesLibrary.basic.RatesCase
-
- energies - Variable in class ratesLibrary.concerted.AbstractConcertedRates
-
- energies - Variable in class ratesLibrary.GrapheneGaillardOneNeighbourRates
-
- energies - Variable in class ratesLibrary.GrapheneGaillardSimpleRates
-
- energies - Variable in class ratesLibrary.GrapheneSchoenhalzRates
-
- energies - Variable in class ratesLibrary.GrapheneSyntheticRates
-
- energies - Variable in class ratesLibrary.SiRatesFromPreGosalvez
-
- eNn - Variable in class ratesLibrary.GrapheneGaillardRates
-
- eNnn - Variable in class ratesLibrary.GrapheneGaillardRates
-
- equalRate(byte) - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
-
- equalRate(byte) - Method in class kineticMonteCarlo.lattice.Island
-
- equalRate() - Method in class kineticMonteCarlo.process.AbstractProcess
-
- equalRate(byte) - Method in interface kineticMonteCarlo.process.IElement
-
- equals(Object) - Method in class java.awt.geom.Point2D
-
Determines whether or not two points are equal.
- equals(Object) - Method in class javafx.geometry.Point3D
-
Returns a hash code value for the point.
- equals(Object) - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
-
In general two atoms are equal if the have the same Id.
- error - Variable in class geneticAlgorithm.evaluationFunctions.AbstractPsdEvaluator
-
- ErrorPanel - Class in graphicInterfaces.gaConvergence
-
- ErrorPanel(Color) - Constructor for class graphicInterfaces.gaConvergence.ErrorPanel
-
- errors - Variable in class geneticAlgorithm.Individual
-
List of errors associated to this individual.
- errors - Variable in class utils.akting.RichArray
-
- errorsNumber - Variable in class geneticAlgorithm.recombination.DifferentialRecombination
-
- evalationComplete - Variable in class geneticAlgorithm.evaluationFunctions.MultithreadedPsdEvaluator
-
- evaluate(Population) - Method in class geneticAlgorithm.evaluationFunctions.AbstractPsdEvaluator
-
- evaluate(Population) - Method in class geneticAlgorithm.evaluationFunctions.AgHierarchyEvaluator
-
- evaluate(Population) - Method in interface geneticAlgorithm.evaluationFunctions.IEvaluation
-
- evaluate(Population) - Method in class geneticAlgorithm.evaluationFunctions.MultithreadedPsdEvaluator
-
- evaluateAndOrder(Population, AbstractPsdEvaluator, List<IEvaluation>) - Method in class geneticAlgorithm.evaluationFunctions.BasicEvaluator
-
Evaluate all the elements of the population with the list of given evaluators
after, it orders them from min to max error.
- evaluateAndOrder(Population, AbstractPsdEvaluator, List<IEvaluation>) - Method in interface geneticAlgorithm.evaluationFunctions.IEvaluator
-
Evaluate all the elements of the population with the list of given evaluators.
- evaluateIndividual(Individual) - Method in class geneticAlgorithm.evaluationFunctions.AbstractPsdEvaluator
-
- evaluateIndividual(int) - Method in class geneticAlgorithm.evaluationFunctions.MultithreadedPsdEvaluator
-
- evaluateModifiedWhenAddNeigh(GrapheneAtom, byte) - Method in class kineticMonteCarlo.lattice.GrapheneLattice
-
- evaluateModifiedWhenRemNeigh(GrapheneAtom, byte) - Method in class kineticMonteCarlo.lattice.GrapheneLattice
-
- evaluator - Variable in class basic.Parser
-
- evaluator - Variable in class geneticAlgorithm.AbstractGeneticAlgorithm
-
- evaluatorFlag(long) - Constructor for enum basic.EvaluatorType.evaluatorFlag
-
- EvaluatorType - Class in basic
-
Evaluator type enumerator.
- EvaluatorType() - Constructor for class basic.EvaluatorType
-
- evaluatorType - Variable in class basic.Parser
-
To have the possibility to choose between different evaluators.
- EvaluatorType.evaluatorFlag - Enum in basic
-
- EvaluatorType.hierarchyFlag - Enum in basic
-
- EVENTS_PER_CLEANUP - Static variable in class utils.list.AbstractList
-
- evolutionaryAlgorithm - Variable in class basic.Parser
-
Can be original or dcma.
- evolutionarySearchType - Variable in class basic.Parser
-
Search for "rates" or "energies".
- evolutionarySimulation(Parser) - Static method in class main.Morphokinetics
-
- executeCommand(String) - Method in class main.ExecuteShellCommand
-
- ExecuteShellCommand - Class in main
-
Class to execute a command as in terminal.
- ExecuteShellCommand() - Constructor for class main.ExecuteShellCommand
-
- exitCondition() - Method in class geneticAlgorithm.AbstractGeneticAlgorithm
-
Break if fitness is good enough or condition exceeds 1e14.
- exitCondition() - Method in class geneticAlgorithm.GeneticAlgorithm
-
- exitCondition() - Method in interface geneticAlgorithm.IGeneticAlgorithm
-
- expDistribution - Variable in class basic.Parser
-
Chooses between exponential distribution of the random genes (true) or linear distribution
(false).
- expDistribution - Variable in class geneticAlgorithm.AbstractGeneticAlgorithm
-
- expectedSimulationTime - Variable in class geneticAlgorithm.AbstractGeneticAlgorithm
-
- expectedSimulationTime - Variable in class geneticAlgorithm.evaluationFunctions.AbstractPsdEvaluator
-
- experimentalPsd - Variable in class geneticAlgorithm.evaluationFunctions.AbstractPsdEvaluator
-
- experimentalPsdPanel2d - Variable in class graphicInterfaces.MainInterface
-
- exponent - Variable in class utils.akting.operations.PowOperation
-
- extentSizes - Variable in class basic.AbstractSimulation
-
- extract(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
Extract the given atom from the lattice.
- extract(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.AgLattice
-
- extract(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.AgUcLatticeSimple
-
- extract(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.BasicGrowthLattice
-
- extract(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.CatalysisLattice
-
- extract(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.Concerted6LatticeSimple
-
- extract(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.GrapheneLattice
-
Extrae el átomo de este lugar (pásalo a no occupied y reduce la vecindad de los átomos vecinos,
si cambia algún tipo, recalcula probabilidades)
- extract(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.GrapheneLatticeSimple
-
- extraLevels - Variable in class basic.Parser
-
- extraOutput - Variable in class basic.io.Restart
-
Attribute to control the output of data every 1% and nucleation.
- extraOutput - Variable in class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
-
Attribute to control the output of data every 1% and nucleation.
- extraOutput - Variable in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
-
Attribute to control the output of data every 1% and nucleation.
- extraOutput2 - Variable in class basic.io.Restart
-
Attribute to control the output of extra data of delta time between two attachments and between
an atom is deposited and attached to an island.
- extraOutput2 - Variable in class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
-
Attribute to control the output of extra data of delta time between two attachments and between
an atom is deposited and attached to an island.
- eye(int) - Static method in class utils.akting.RichMatrix
-