basic.io

Class RestartLow

java.lang.Object

basic.io.RestartLow

class RestartLow
extends java.lang.Object

Class responsible to do the actual writings and readings. Only has to be used from Restart class.

Author:

J. Alberdi-Rodriguez

Constructor Summary

Constructors

Constructor and Description
RestartLow()

Method Summary

Modifier and Type	Method and Description
(package private) static java.lang.String	readGitRevision(java.lang.String folder)
(package private) static float[][]	readLowBinary(java.lang.String fileName) This method reads the binary file
(package private) static float[][]	readLowText2D(java.lang.String fileName)
(package private) static float[][]	readLowText2D(java.lang.String fileName, int[] sizes, boolean shift)
(package private) static java.util.ArrayList<java.util.ArrayList>	readLowTextData(java.lang.String fileName) Reads a file to a ArrayList of unknown size aimed to be like array[][]
(package private) static java.util.List<java.lang.String>	readSmallTextFile(java.lang.String fileName) Only used to read input "parameters" file.
(package private) static void	writeAdsorptionLowSimulationDataText(double[][] data, java.lang.String fileName)
private static void	writeHeaderBinary(int dimensions, int[] sizes, java.lang.String fileName) The header of the file has to have the following structure: - The "Morphokinetics" keyword - The number of dimensions (int) - The size of each dimension (3 x int) - Trash to fill 64 bytes (in case we need some more space for the future) Right now is 32.
(package private) static void	writeLowBinary(int dimensions, int[] sizes, float[][] data, java.lang.String fileName) This method does the actual writing to the file
(package private) static void	writeLowText1D(float[] data, java.lang.String fileName)
(package private) static void	writeLowText2D(float[][] data, java.lang.String fileName, boolean shift)
(package private) static void	writeLowTextHexagonal(float[][] data, java.lang.String fileName)
(package private) static void	writeSvg(java.lang.String fileName, AbstractLattice lattice) Writes a SVG format file.
(package private) static void	writeXyz(java.lang.String fileName, AbstractLattice lattice) Writes a XYZ format file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RestartLow

RestartLow()

Method Detail

writeLowBinary

static void writeLowBinary(int dimensions,
                           int[] sizes,
                           float[][] data,
                           java.lang.String fileName)

This method does the actual writing to the file

Parameters:

dimensions -

sizes -

data -

fileName -

readLowBinary

static float[][] readLowBinary(java.lang.String fileName)
                        throws java.io.FileNotFoundException

This method reads the binary file

Parameters:

fileName - file name to be read

Returns:

read surface

Throws:

java.io.FileNotFoundException

writeLowText1D

static void writeLowText1D(float[] data,
                           java.lang.String fileName)

writeLowText2D

static void writeLowText2D(float[][] data,
                           java.lang.String fileName,
                           boolean shift)

readLowText2D

static float[][] readLowText2D(java.lang.String fileName)
                        throws java.io.FileNotFoundException

Throws:

java.io.FileNotFoundException

readLowText2D

static float[][] readLowText2D(java.lang.String fileName,
                               int[] sizes,
                               boolean shift)
                        throws java.io.FileNotFoundException

Throws:

java.io.FileNotFoundException

readLowTextData

static java.util.ArrayList<java.util.ArrayList> readLowTextData(java.lang.String fileName)
                                                         throws java.io.FileNotFoundException

Reads a file to a ArrayList of unknown size aimed to be like array[][]

Parameters:

fileName -

Returns:

Throws:

java.io.FileNotFoundException

readGitRevision

static java.lang.String readGitRevision(java.lang.String folder)

writeLowTextHexagonal

static void writeLowTextHexagonal(float[][] data,
                                  java.lang.String fileName)

writeXyz

static void writeXyz(java.lang.String fileName,
                     AbstractLattice lattice)

Writes a XYZ format file.

Parameters:

fileName -

lattice -

writeSvg

static void writeSvg(java.lang.String fileName,
                     AbstractLattice lattice)

Writes a SVG format file.

Parameters:

fileName -

lattice -

writeAdsorptionLowSimulationDataText

static void writeAdsorptionLowSimulationDataText(double[][] data,
                                                 java.lang.String fileName)

readSmallTextFile

static java.util.List<java.lang.String> readSmallTextFile(java.lang.String fileName)
                                                   throws java.io.IOException

Only used to read input "parameters" file.

Parameters:

fileName -

Returns:

Throws:

java.io.IOException

writeHeaderBinary

private static void writeHeaderBinary(int dimensions,
                                      int[] sizes,
                                      java.lang.String fileName)

The header of the file has to have the following structure: - The "Morphokinetics" keyword - The number of dimensions (int) - The size of each dimension (3 x int) - Trash to fill 64 bytes (in case we need some more space for the future) Right now is 32. Has to be adapted in the future

Parameters:

dimensions -

sizes -