Hierarchy For All Packages

Package Hierarchies:

• basic,
• basic.io,
• geneticAlgorithm,
• geneticAlgorithm.evaluationFunctions,
• geneticAlgorithm.mutation,
• geneticAlgorithm.populationInitialisation,
• geneticAlgorithm.recombination,
• geneticAlgorithm.reinsertion,
• geneticAlgorithm.restrictions,
• geneticAlgorithm.selection,
• graphicInterfaces,
• graphicInterfaces.basic,
• graphicInterfaces.etching,
• graphicInterfaces.etching.mouseBehaviors,
• graphicInterfaces.gaConvergence,
• graphicInterfaces.growth,
• graphicInterfaces.surfaceViewer2D,
• graphicInterfacesCommon.growth,
• graphicInterfacesCommon.surfaceViewer2D,
• java.awt.geom,
• javafx.geometry,
• kineticMonteCarlo.atom,
• kineticMonteCarlo.kmcCore,
• kineticMonteCarlo.kmcCore.catalysis,
• kineticMonteCarlo.kmcCore.etching,
• kineticMonteCarlo.kmcCore.growth,
• kineticMonteCarlo.kmcCore.growth.devitaAccelerator,
• kineticMonteCarlo.kmcCore.worker,
• kineticMonteCarlo.lattice,
• kineticMonteCarlo.lattice.perimeterStatistics,
• kineticMonteCarlo.process,
• kineticMonteCarlo.unitCell,
• main,
• ratesLibrary,
• ratesLibrary.basic,
• ratesLibrary.concerted,
• samples.agAgGrowth,
• samples.basic,
• samples.convergences.agAgGrowth,
• samples.convergences.siEtching,
• samples.grapheneCvdGrowth,
• samples.silicon,
• samples.worker,
• utils,
• utils.akting,
• utils.akting.operations,
• utils.akting.tests,
• utils.edu.cornell.lassp.houle.rngPack,
• utils.list,
• utils.list.atoms,
• utils.psdAnalysis

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • graphicInterfaces.growth.GrowthKmcFrame.Pause
  • kineticMonteCarlo.atom.AbstractAtom (implements kineticMonteCarlo.atom.IAtom)
    • kineticMonteCarlo.atom.AbstractGrowthAtom (implements java.lang.Comparable<T>, kineticMonteCarlo.process.IElement)
      • kineticMonteCarlo.atom.AgAtom
        • kineticMonteCarlo.atom.AgAtomSimple
          • kineticMonteCarlo.atom.ConcertedAtom
      • kineticMonteCarlo.atom.BasicGrowthAtom
        • kineticMonteCarlo.atom.BasicGrowthSimpleAtom
      • kineticMonteCarlo.atom.CatalysisAtom
      • kineticMonteCarlo.atom.GrapheneAtom
        • kineticMonteCarlo.atom.GrapheneAtomGaillard
        • kineticMonteCarlo.atom.GrapheneAtomGaillard1Neighbour
        • kineticMonteCarlo.atom.GrapheneAtomGaillardSimple
        • kineticMonteCarlo.atom.GrapheneAtomSchoenhalz
    • kineticMonteCarlo.atom.BasicAtom
    • kineticMonteCarlo.atom.SiAtom
  • ratesLibrary.AbstractBasicGrowthRates (implements ratesLibrary.IRates)
    • ratesLibrary.BasicGrowth2Rates
    • ratesLibrary.BasicGrowth3Rates
    • ratesLibrary.BasicGrowthSimpleRates
    • ratesLibrary.BasicGrowthSyntheticRates
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • geneticAlgorithm.IndividualGroup
        • utils.akting.RichArray
        • utils.akting.RichMatrix
  • ratesLibrary.concerted.AbstractConcertedRates (implements ratesLibrary.IRates)
    • ratesLibrary.concerted.ConcertedAgAgRates
    • ratesLibrary.concerted.ConcertedCuCuRates
    • ratesLibrary.concerted.ConcertedCuNiRates
    • ratesLibrary.concerted.ConcertedNiCuRates
    • ratesLibrary.concerted.ConcertedNiNiRates
    • ratesLibrary.concerted.ConcertedPdPdRates
  • geneticAlgorithm.evaluationFunctions.AbstractEvaluator (implements geneticAlgorithm.evaluationFunctions.IEvaluation)
    • geneticAlgorithm.evaluationFunctions.AbstractPsdEvaluator
      • geneticAlgorithm.evaluationFunctions.AgBasicPsdEvaluator
      • geneticAlgorithm.evaluationFunctions.BasicGrowthPsdEvaluator
      • geneticAlgorithm.evaluationFunctions.MultithreadedPsdEvaluator (implements kineticMonteCarlo.kmcCore.worker.IFinishListener, kineticMonteCarlo.kmcCore.worker.IIntervalListener)
        • geneticAlgorithm.evaluationFunctions.AgThreadedPsdEvaluator (implements kineticMonteCarlo.kmcCore.worker.IFinishListener, kineticMonteCarlo.kmcCore.worker.IIntervalListener)
        • geneticAlgorithm.evaluationFunctions.SiThreadedPsdEvaluator (implements kineticMonteCarlo.kmcCore.worker.IFinishListener, kineticMonteCarlo.kmcCore.worker.IIntervalListener)
      • geneticAlgorithm.evaluationFunctions.SiBasicPsdEvaluator
    • geneticAlgorithm.evaluationFunctions.AgHierarchyEvaluator
  • geneticAlgorithm.AbstractGeneticAlgorithm (implements geneticAlgorithm.IGeneticAlgorithm)
    • geneticAlgorithm.GeneticAlgorithm (implements geneticAlgorithm.IGeneticAlgorithm)
    • geneticAlgorithm.GeneticAlgorithmDcmaEs (implements geneticAlgorithm.IGeneticAlgorithm)
  • kineticMonteCarlo.atom.AbstractGrowthAtomAttributes
    • kineticMonteCarlo.atom.CatalysisAtomAttributes
  • kineticMonteCarlo.unitCell.AbstractGrowthUc (implements kineticMonteCarlo.unitCell.IUc)
    • kineticMonteCarlo.unitCell.AgUc (implements kineticMonteCarlo.unitCell.IUc)
    • kineticMonteCarlo.unitCell.CatalysisUc (implements kineticMonteCarlo.unitCell.IUc)
    • kineticMonteCarlo.unitCell.SimpleUc (implements kineticMonteCarlo.unitCell.IUc)
  • geneticAlgorithm.populationInitialisation.AbstractInitialisator (implements geneticAlgorithm.populationInitialisation.IInitialisator)
    • geneticAlgorithm.populationInitialisation.AgInitialisator (implements geneticAlgorithm.populationInitialisation.IInitialisator)
    • geneticAlgorithm.populationInitialisation.AgReduced6Initialisator (implements geneticAlgorithm.populationInitialisation.IInitialisator)
    • geneticAlgorithm.populationInitialisation.AgReducedInitialisator (implements geneticAlgorithm.populationInitialisation.IInitialisator)
    • geneticAlgorithm.populationInitialisation.BasicGrowthInitialisator (implements geneticAlgorithm.populationInitialisation.IInitialisator)
    • geneticAlgorithm.populationInitialisation.SiInitialisator (implements geneticAlgorithm.populationInitialisation.IInitialisator)
  • kineticMonteCarlo.kmcCore.AbstractKmc (implements kineticMonteCarlo.kmcCore.IKmc)
    • kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
      • kineticMonteCarlo.kmcCore.growth.AgKmc
      • kineticMonteCarlo.kmcCore.growth.AgUcKmc
      • kineticMonteCarlo.kmcCore.growth.BasicGrowthKmc
      • kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
        • kineticMonteCarlo.kmcCore.catalysis.CatalysisFarkasKmc
      • kineticMonteCarlo.kmcCore.growth.ConcertedKmc
      • kineticMonteCarlo.kmcCore.growth.GrapheneKmc
    • kineticMonteCarlo.kmcCore.etching.BasicKmc
    • kineticMonteCarlo.kmcCore.etching.SiKmc
  • kineticMonteCarlo.lattice.AbstractLattice
    • kineticMonteCarlo.lattice.AbstractGrowthLattice (implements kineticMonteCarlo.lattice.IDevitaLattice)
      • kineticMonteCarlo.lattice.AgLattice
        • kineticMonteCarlo.lattice.AgUcLattice
          • kineticMonteCarlo.lattice.AgUcLatticeSimple
            • kineticMonteCarlo.lattice.Concerted6LatticeSimple
      • kineticMonteCarlo.lattice.BasicGrowthLattice
      • kineticMonteCarlo.lattice.CatalysisLattice
      • kineticMonteCarlo.lattice.GrapheneLattice
        • kineticMonteCarlo.lattice.GrapheneLatticeSimple
    • kineticMonteCarlo.lattice.BasicLattice
    • kineticMonteCarlo.lattice.SiLattice
  • utils.list.AbstractList (implements utils.list.IProbabilityHolder)
    • utils.list.BinnedList (implements utils.list.IProbabilityHolder)
    • utils.list.LinearList (implements utils.list.IProbabilityHolder)
  • kineticMonteCarlo.lattice.perimeterStatistics.AbstractPerimeterStatistics
    • kineticMonteCarlo.lattice.perimeterStatistics.PerimeterStatistics
  • kineticMonteCarlo.process.AbstractProcess
    • kineticMonteCarlo.process.CatalysisProcess
    • kineticMonteCarlo.process.ConcertedProcess
    • kineticMonteCarlo.process.MultiAtomProcess
  • basic.AbstractSimulation
    • basic.AbstractEtchingSimulation
      • basic.SiSimulation
    • basic.AbstractGrowthSimulation
      • basic.AgSimulation
      • basic.AgUcSimulation
      • basic.BasicGrowthSimulation
      • basic.CatalysisSimulation
      • basic.ConcertedSimulation
      • basic.GrapheneSimulation
  • kineticMonteCarlo.kmcCore.growth.ActivationEnergy
  • samples.convergences.agAgGrowth.AgAgKmcConvergence
  • samples.convergences.agAgGrowth.AgAgKmcConvergenceDcmaEs
  • samples.agAgGrowth.AgAgMultithreadedEvaluatorTest
  • samples.agAgGrowth.AgAgPsdTest
  • ratesLibrary.AgRatesFromPrbCox (implements ratesLibrary.IRates)
  • ratesLibrary.AgSimpleRates (implements ratesLibrary.IRates)
  • kineticMonteCarlo.atom.AgTypesTable
  • kineticMonteCarlo.atom.ArrayStack
  • utils.list.atoms.AtomsArrayList<T> (implements utils.list.atoms.IAtomsCollection<T>)
  • utils.list.atoms.AtomsAvlTree<T> (implements utils.list.atoms.IAtomsCollection<T>)
  • utils.list.atoms.AtomsCollection
  • utils.list.atoms.AvlTree<T>
  • utils.list.atoms.AvlTree.Itr (implements java.util.Iterator<E>)
  • geneticAlgorithm.evaluationFunctions.BasicEvaluator (implements geneticAlgorithm.evaluationFunctions.IEvaluator, geneticAlgorithm.IProgressable)
  • kineticMonteCarlo.atom.BasicGrowthTypesTable
  • geneticAlgorithm.mutation.BgaBasedMutator (implements geneticAlgorithm.mutation.IMutation)
  • utils.list.BinnedListIterator (implements java.util.ListIterator<E>)
  • basic.io.CatalysisData
  • ratesLibrary.CatalysisRates (implements ratesLibrary.IRates)
    • ratesLibrary.CatalysisFarkasRates
    • ratesLibrary.CatalysisFarkasTestRates
    • ratesLibrary.CatalysisKiejnaRates
    • ratesLibrary.CatalysisReuterOverRates
    • ratesLibrary.CatalysisReuterRates
    • ratesLibrary.CatalysisSeitsonenRates
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Canvas (implements javax.accessibility.Accessible)
      • javax.media.j3d.Canvas3D
        • graphicInterfaces.etching.Canvas3DOverlay
      • graphicInterfaces.growth.KmcCanvas
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • graphicInterfaces.basic.BasicPanel
          • graphicInterfaces.gaConvergence.ErrorPanel
          • graphicInterfaces.gaConvergence.GaProgressPanel (implements graphicInterfaces.gaConvergence.IgaProgressFrame)
          • graphicInterfaces.surfaceViewer2D.Panel2D
          • graphicInterfaces.surfaceViewer2D.SurfaceViewerPanel2D
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • graphicInterfaces.basic.BasicFrame (implements graphicInterfaces.KmcGraphics)
            • graphicInterfaces.surfaceViewer2D.Frame2D (implements graphicInterfacesCommon.surfaceViewer2D.IFrame2D)
            • graphicInterfaces.gaConvergence.GaProgressFrame (implements graphicInterfaces.gaConvergence.IgaProgressFrame)
            • graphicInterfaces.growth.GrowthKmcFrame (implements graphicInterfacesCommon.growth.IGrowthKmcFrame)
            • graphicInterfaces.MainInterface
            • graphicInterfaces.etching.SiFrame (implements graphicInterfaces.KmcGraphics)
  • kineticMonteCarlo.kmcCore.growth.ConcertedKmcAction
  • kineticMonteCarlo.kmcCore.growth.ConcertedKmcUpdate
  • main.Configurator
  • utils.akting.operations.CosOperation (implements utils.akting.operations.Operation)
  • geneticAlgorithm.Couple
  • geneticAlgorithm.mutation.CrossoverMutator (implements geneticAlgorithm.mutation.IMutation)
  • utils.akting.operations.CustomPiOperation (implements utils.akting.operations.Operation)
  • utils.akting.operations.DeductOperation (implements utils.akting.operations.Operation)
  • kineticMonteCarlo.kmcCore.growth.devitaAccelerator.DevitaAccelerator
  • kineticMonteCarlo.kmcCore.growth.devitaAccelerator.DevitaHopsConfig
  • geneticAlgorithm.recombination.DifferentialRecombination (implements geneticAlgorithm.recombination.IRecombination)
  • utils.akting.operations.DivideOperation (implements utils.akting.operations.Operation)
  • geneticAlgorithm.reinsertion.ElitistAllReinsertion (implements geneticAlgorithm.reinsertion.IReinsertion)
  • geneticAlgorithm.reinsertion.ElitistReinsertion (implements geneticAlgorithm.reinsertion.IReinsertion)
  • basic.EvaluatorType
  • main.ExecuteShellCommand
  • geneticAlgorithm.restrictions.GeneRestriction
    • geneticAlgorithm.restrictions.BoundedGeneRestriction
    • geneticAlgorithm.restrictions.FixedGeneRestriction
    • geneticAlgorithm.restrictions.ReplicatedGeneRestriction
  • ratesLibrary.GrapheneGaillardOneNeighbourRates (implements ratesLibrary.IRates)
  • ratesLibrary.GrapheneGaillardRates (implements ratesLibrary.IRates)
  • ratesLibrary.GrapheneGaillardSimpleRates (implements ratesLibrary.IRates)
  • ratesLibrary.GrapheneSchoenhalzRates (implements ratesLibrary.IRates)
  • ratesLibrary.GrapheneSyntheticRates (implements ratesLibrary.IRates)
  • kineticMonteCarlo.atom.GrapheneTypesTable
  • graphicInterfaces.growth.GrowthKmcFrame.MenuItemHandler (implements java.awt.event.ItemListener)
  • kineticMonteCarlo.kmcCore.growth.devitaAccelerator.HopsPerStep
  • geneticAlgorithm.Individual
  • kineticMonteCarlo.lattice.Island (implements java.lang.Comparable<T>, kineticMonteCarlo.process.IElement)
    • kineticMonteCarlo.lattice.MultiAtom
  • utils.LinearRegression
  • utils.MathUtils
  • kineticMonteCarlo.atom.ModifiedBuffer
  • main.Morphokinetics
  • utils.akting.operations.MultiplyOperation (implements utils.akting.operations.Operation)
  • utils.list.Node<T> (implements java.lang.Comparable<T>)
  • utils.akting.operations.OperationFactory
  • basic.io.OutputType
  • basic.Parser
  • main.PcConfigurator (implements main.IConfigurator)
  • kineticMonteCarlo.lattice.perimeterStatistics.PerimeterStatisticsFactory
  • java.awt.geom.Point2D (implements java.lang.Cloneable)
    • java.awt.geom.Point2D.Double (implements java.io.Serializable)
    • java.awt.geom.Point2D.Float (implements java.io.Serializable)
  • javafx.geometry.Point3D
  • geneticAlgorithm.Population
  • utils.akting.operations.PowOperation (implements utils.akting.operations.Operation)
  • main.printByHand
  • utils.printByHandHelper
  • main.PsdFromSurfaces
  • utils.psdAnalysis.PsdSignature2D
  • utils.QuickSort
  • utils.edu.cornell.lassp.houle.rngPack.RandomApp
  • utils.edu.cornell.lassp.houle.rngPack.RandomElement (implements java.lang.Cloneable)
    • utils.edu.cornell.lassp.houle.rngPack.RandomJava
    • utils.edu.cornell.lassp.houle.rngPack.RandomSeedable
      • utils.edu.cornell.lassp.houle.rngPack.Ranecu (implements java.io.Serializable)
      • utils.edu.cornell.lassp.houle.rngPack.Ranlux (implements java.io.Serializable)
      • utils.edu.cornell.lassp.houle.rngPack.Ranmar (implements java.io.Serializable)
      • utils.edu.cornell.lassp.houle.rngPack.RanMT (implements java.io.Serializable)
    • utils.edu.cornell.lassp.houle.rngPack.RandomShuffle
    • utils.edu.cornell.lassp.houle.rngPack.RandomSynchronized (implements java.io.Serializable)
  • geneticAlgorithm.selection.RandomSelection (implements geneticAlgorithm.selection.ISelection)
  • geneticAlgorithm.selection.RankingSelection (implements geneticAlgorithm.selection.ISelection)
  • ratesLibrary.basic.RatesCase (implements ratesLibrary.basic.IBasicRates, ratesLibrary.IRates)
    • ratesLibrary.basic.RatesCaseE
    • ratesLibrary.basic.RatesCaseF
    • ratesLibrary.basic.RatesCaseH
    • ratesLibrary.basic.RatesCaseOther
  • geneticAlgorithm.recombination.RealRecombination (implements geneticAlgorithm.recombination.IRecombination)
  • basic.io.Restart
  • basic.io.RestartLow
  • geneticAlgorithm.restrictions.RestrictionOperator
    • geneticAlgorithm.restrictions.AgReduced6Restriction
    • geneticAlgorithm.restrictions.AgReducedRestriction
    • geneticAlgorithm.restrictions.AgRestriction
    • geneticAlgorithm.restrictions.BasicGrowthRestriction
    • geneticAlgorithm.restrictions.SiRestriction
  • utils.akting.RichArrayComparator (implements java.util.Comparator<T>)
  • kineticMonteCarlo.kmcCore.growth.RoundPerimeter
  • javax.media.j3d.SceneGraphObject
    • javax.media.j3d.Node
      • javax.media.j3d.Leaf
        • javax.media.j3d.Behavior
          • com.sun.j3d.utils.behaviors.mouse.MouseBehavior (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
            • graphicInterfaces.etching.mouseBehaviors.MouseRocking
            • graphicInterfaces.etching.mouseBehaviors.MouseRotate
            • graphicInterfaces.etching.mouseBehaviors.MouseTranslate
            • graphicInterfaces.etching.mouseBehaviors.MouseZoom
    • javax.media.j3d.NodeComponent
      • javax.media.j3d.Geometry
        • javax.media.j3d.GeometryArray
          • javax.media.j3d.PointArray
            • graphicInterfaces.etching.SiPointArray
  • samples.convergences.siEtching.SiEtchingKmcConvergence
  • samples.silicon.SiliconMultithreadedPsdCalculation
  • samples.silicon.SiliconPsdDifferencesBetweenTemperatures
  • kineticMonteCarlo.unitCell.Simple3dUc (implements kineticMonteCarlo.unitCell.IUc)
  • samples.agAgGrowth.SimpleAgAgGrowthKmcSimulation
  • samples.basic.SimpleBasicKmcSimulation
  • samples.grapheneCvdGrowth.SimpleGrapheneKmcSimulation
  • samples.worker.SimpleKmcSimulationWithWorker (implements kineticMonteCarlo.kmcCore.worker.IFinishListener)
  • samples.silicon.SimpleSiliconKmcFftAnalisys
  • samples.silicon.SimpleSiliconKmcSimulation
  • utils.akting.operations.SinOperation (implements utils.akting.operations.Operation)
  • ratesLibrary.SiRatesFromPreGosalvez (implements ratesLibrary.IRates)
  • kineticMonteCarlo.unitCell.SiUnitCell
  • utils.akting.operations.SqrtOperation (implements utils.akting.operations.Operation)
  • utils.StaticRandom
  • kineticMonteCarlo.lattice.perimeterStatistics.Statistics
  • utils.akting.tests.TestSuite
  • java.lang.Thread (implements java.lang.Runnable)
    • geneticAlgorithm.AbstractGeneticAlgorithm.Updater
    • basic.AbstractGrowthSimulation.PaintLoop
    • basic.AbstractGrowthSimulation.TerminalLoop
    • geneticAlgorithm.evaluationFunctions.BasicGrowthPsdEvaluator.Runner
    • graphicInterfaces.gaConvergence.GaProgressFrame.ProgressUpdater
    • kineticMonteCarlo.kmcCore.worker.KmcWorker
    • utils.printByHandHelper.paintLoop
    • samples.agAgGrowth.SimpleAgAgGrowthKmcSimulation.paintLoop
    • samples.grapheneCvdGrowth.SimpleGrapheneKmcSimulation.paintLoop
  • utils.Wait

Interface Hierarchy

• kineticMonteCarlo.atom.IAtom
• utils.list.atoms.IAtomsCollection<T>
• ratesLibrary.basic.IBasicRates
• main.IConfigurator
• kineticMonteCarlo.lattice.IDevitaLattice
• kineticMonteCarlo.process.IElement
• geneticAlgorithm.evaluationFunctions.IEvaluation
• geneticAlgorithm.evaluationFunctions.IEvaluator
• kineticMonteCarlo.kmcCore.worker.IFinishListener
• graphicInterfacesCommon.surfaceViewer2D.IFrame2D
• graphicInterfaces.gaConvergence.IgaProgressFrame
• graphicInterfacesCommon.growth.IGrowthKmcFrame
• geneticAlgorithm.populationInitialisation.IInitialisator
• kineticMonteCarlo.kmcCore.worker.IIntervalListener
• kineticMonteCarlo.kmcCore.IKmc
• geneticAlgorithm.mutation.IMutation
• utils.list.IProbabilityHolder
• geneticAlgorithm.IProgressable
  • geneticAlgorithm.IGeneticAlgorithm
• ratesLibrary.IRates
• geneticAlgorithm.recombination.IRecombination
• geneticAlgorithm.reinsertion.IReinsertion
• geneticAlgorithm.selection.ISelection
• kineticMonteCarlo.unitCell.IUc
• graphicInterfaces.KmcGraphics
• utils.akting.operations.Operation

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • basic.EvaluatorType.evaluatorFlag
    • basic.EvaluatorType.hierarchyFlag
    • basic.io.OutputType.formatFlag