A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

B

B - Variable in class geneticAlgorithm.recombination.DifferentialRecombination

B defines the coordinate system.

balanceNumber(Node<T>) - Method in class utils.list.atoms.AvlTree

baseX - Variable in class graphicInterfaces.growth.KmcCanvas

baseY - Variable in class graphicInterfaces.growth.KmcCanvas

basic - package basic

basic.io - package basic.io

BasicAtom - Class in kineticMonteCarlo.atom

BasicAtom(short, short) - Constructor for class kineticMonteCarlo.atom.BasicAtom

BasicEvaluator - Class in geneticAlgorithm.evaluationFunctions

This is a basic class that sequentially applies all the evaluation functions over a population.

BasicEvaluator() - Constructor for class geneticAlgorithm.evaluationFunctions.BasicEvaluator

BasicFrame - Class in graphicInterfaces.basic

BasicFrame(int) - Constructor for class graphicInterfaces.basic.BasicFrame

BasicGrowth2Rates - Class in ratesLibrary

BasicGrowth2Rates() - Constructor for class ratesLibrary.BasicGrowth2Rates

Same as BasicGrowthSyntheticRates but with only 3 different energies.

BasicGrowth3Rates - Class in ratesLibrary

BasicGrowth3Rates() - Constructor for class ratesLibrary.BasicGrowth3Rates

Same as BasicGrowthSyntheticRates but with only 3 different energies.

BasicGrowthAtom - Class in kineticMonteCarlo.atom

BasicGrowthAtom(int, short, short) - Constructor for class kineticMonteCarlo.atom.BasicGrowthAtom

BasicGrowthInitialisator - Class in geneticAlgorithm.populationInitialisation

This class only considers 5 different genes for basic growth.

BasicGrowthInitialisator() - Constructor for class geneticAlgorithm.populationInitialisation.BasicGrowthInitialisator

BasicGrowthKmc - Class in kineticMonteCarlo.kmcCore.growth

BasicGrowthKmc(Parser) - Constructor for class kineticMonteCarlo.kmcCore.growth.BasicGrowthKmc

BasicGrowthLattice - Class in kineticMonteCarlo.lattice

BasicGrowthLattice(int, int, ModifiedBuffer, boolean) - Constructor for class kineticMonteCarlo.lattice.BasicGrowthLattice

BasicGrowthPsdEvaluator - Class in geneticAlgorithm.evaluationFunctions

BasicGrowthPsdEvaluator(BasicGrowthKmc, int, int, int, int, Set, String, String, float) - Constructor for class geneticAlgorithm.evaluationFunctions.BasicGrowthPsdEvaluator

BasicGrowthPsdEvaluator.Runner - Class in geneticAlgorithm.evaluationFunctions

Inner class responsible to update the interface.

BasicGrowthRestriction - Class in geneticAlgorithm.restrictions

We have only 5 genes, which correspond to all different rates we can find in an Ag/Ag simulation.

BasicGrowthRestriction() - Constructor for class geneticAlgorithm.restrictions.BasicGrowthRestriction

BasicGrowthRestriction(int, double, double, boolean) - Constructor for class geneticAlgorithm.restrictions.BasicGrowthRestriction

BasicGrowthSimpleAtom - Class in kineticMonteCarlo.atom

BasicGrowthSimpleAtom(int, short, short) - Constructor for class kineticMonteCarlo.atom.BasicGrowthSimpleAtom

BasicGrowthSimpleRates - Class in ratesLibrary

BasicGrowthSimpleRates() - Constructor for class ratesLibrary.BasicGrowthSimpleRates

BasicGrowthSimulation - Class in basic

BasicGrowthSimulation(Parser) - Constructor for class basic.BasicGrowthSimulation

BasicGrowthSyntheticRates - Class in ratesLibrary

BasicGrowthSyntheticRates() - Constructor for class ratesLibrary.BasicGrowthSyntheticRates

BasicGrowthTypesTable - Class in kineticMonteCarlo.atom

BasicGrowthTypesTable() - Constructor for class kineticMonteCarlo.atom.BasicGrowthTypesTable

All predefined type of atom (current if the atom is occupied and future if the atom is not occupied).

BasicKmc - Class in kineticMonteCarlo.kmcCore.etching

BasicKmc(Parser) - Constructor for class kineticMonteCarlo.kmcCore.etching.BasicKmc

BasicLattice - Class in kineticMonteCarlo.lattice

BasicLattice(int, int) - Constructor for class kineticMonteCarlo.lattice.BasicLattice

BasicPanel - Class in graphicInterfaces.basic

BasicPanel(int) - Constructor for class graphicInterfaces.basic.BasicPanel

Creates new form dibujaKMC

batchSimulation(Parser) - Static method in class main.Morphokinetics

BgaBasedMutator - Class in geneticAlgorithm.mutation

BgaBasedMutator() - Constructor for class geneticAlgorithm.mutation.BgaBasedMutator

BIG_PRIME - Static variable in class utils.edu.cornell.lassp.houle.rngPack.Ranmar

The 46,009,220nd prime number, he largest prime less than 9*10⁸.

BIN_DIFFERENCE_FACTOR - Static variable in class utils.list.BinnedList

BinnedList - Class in utils.list

BinnedList(Parser, int, int) - Constructor for class utils.list.BinnedList

BinnedListIterator - Class in utils.list

BinnedListIterator(BinnedList) - Constructor for class utils.list.BinnedListIterator

bins - Variable in class utils.list.BinnedList

binsLevels - Variable in class basic.Parser

See Parser.getBinsLevels().

blackAndWhite - Variable in class graphicInterfaces.growth.KmcCanvas

BLUE - Static variable in class graphicInterfaces.growth.KmcCanvas

BLUEVIOLET - Static variable in class graphicInterfaces.growth.KmcCanvas

BMoutput - Variable in class utils.edu.cornell.lassp.houle.rngPack.RandomElement

bondsProbability - Variable in class kineticMonteCarlo.atom.AbstractGrowthAtom

Current probabilities to jump to neighbour position.

BOUNDED_VALUES - Static variable in class geneticAlgorithm.restrictions.GeneRestriction

BoundedGeneRestriction - Class in geneticAlgorithm.restrictions

BoundedGeneRestriction(double, double, int) - Constructor for class geneticAlgorithm.restrictions.BoundedGeneRestriction

BR - Static variable in class kineticMonteCarlo.atom.CatalysisAtom

buffer - Variable in class graphicInterfaces.etching.SiPointArray

buffer - Variable in class kineticMonteCarlo.atom.ModifiedBuffer

buffer - Variable in class utils.psdAnalysis.PsdSignature2D

bufferL - Variable in class kineticMonteCarlo.atom.ModifiedBuffer

BULK - Static variable in class kineticMonteCarlo.atom.AbstractAtom

bwButton - Variable in class graphicInterfaces.growth.GrowthKmcFrame

bwMi - Variable in class graphicInterfaces.growth.GrowthKmcFrame

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