- AbstractAtom - Class in kineticMonteCarlo.atom
-
- AbstractAtom() - Constructor for class kineticMonteCarlo.atom.AbstractAtom
-
- AbstractBasicGrowthRates - Class in ratesLibrary
-
- AbstractBasicGrowthRates() - Constructor for class ratesLibrary.AbstractBasicGrowthRates
-
- AbstractConcertedRates - Class in ratesLibrary.concerted
-
- AbstractConcertedRates(float) - Constructor for class ratesLibrary.concerted.AbstractConcertedRates
-
- AbstractEtchingSimulation - Class in basic
-
- AbstractEtchingSimulation(Parser) - Constructor for class basic.AbstractEtchingSimulation
-
- AbstractEvaluator - Class in geneticAlgorithm.evaluationFunctions
-
- AbstractEvaluator() - Constructor for class geneticAlgorithm.evaluationFunctions.AbstractEvaluator
-
- AbstractGeneticAlgorithm - Class in geneticAlgorithm
-
- AbstractGeneticAlgorithm(Parser, ISelection, IMutation, IRecombination, IReinsertion) - Constructor for class geneticAlgorithm.AbstractGeneticAlgorithm
-
- AbstractGeneticAlgorithm.Updater - Class in geneticAlgorithm
-
Inner class responsible to update the interface.
- AbstractGrowthAtom - Class in kineticMonteCarlo.atom
-
- AbstractGrowthAtom(int, short, short, int, int) - Constructor for class kineticMonteCarlo.atom.AbstractGrowthAtom
-
- AbstractGrowthAtom(int, int) - Constructor for class kineticMonteCarlo.atom.AbstractGrowthAtom
-
Dummy constructor to be able to have a proper AgAtom(pos) constructor.
- AbstractGrowthAtomAttributes - Class in kineticMonteCarlo.atom
-
Atom attributes which move with diffusion.
- AbstractGrowthAtomAttributes() - Constructor for class kineticMonteCarlo.atom.AbstractGrowthAtomAttributes
-
- AbstractGrowthKmc - Class in kineticMonteCarlo.kmcCore.growth
-
- AbstractGrowthKmc(Parser) - Constructor for class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
-
- AbstractGrowthLattice - Class in kineticMonteCarlo.lattice
-
In this case we assume that the unit cell is one and it only contains one element.
- AbstractGrowthLattice(int, int, ModifiedBuffer) - Constructor for class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
- AbstractGrowthSimulation - Class in basic
-
- AbstractGrowthSimulation(Parser) - Constructor for class basic.AbstractGrowthSimulation
-
- AbstractGrowthSimulation.PaintLoop - Class in basic
-
Private class responsible to repaint every 100 ms the KMC frame.
- AbstractGrowthSimulation.TerminalLoop - Class in basic
-
Private class responsible to repaint every 1000 ms the progress bar to the terminal.
- AbstractGrowthUc - Class in kineticMonteCarlo.unitCell
-
- AbstractGrowthUc() - Constructor for class kineticMonteCarlo.unitCell.AbstractGrowthUc
-
- AbstractInitialisator - Class in geneticAlgorithm.populationInitialisation
-
- AbstractInitialisator() - Constructor for class geneticAlgorithm.populationInitialisation.AbstractInitialisator
-
- AbstractKmc - Class in kineticMonteCarlo.kmcCore
-
- AbstractKmc(Parser) - Constructor for class kineticMonteCarlo.kmcCore.AbstractKmc
-
- AbstractLattice - Class in kineticMonteCarlo.lattice
-
- AbstractLattice() - Constructor for class kineticMonteCarlo.lattice.AbstractLattice
-
- AbstractList - Class in utils.list
-
- AbstractList(Parser) - Constructor for class utils.list.AbstractList
-
- AbstractPerimeterStatistics - Class in kineticMonteCarlo.lattice.perimeterStatistics
-
- AbstractPerimeterStatistics(Statistics, Statistics) - Constructor for class kineticMonteCarlo.lattice.perimeterStatistics.AbstractPerimeterStatistics
-
This constructor limits the size of the perimeter.
- AbstractProcess - Class in kineticMonteCarlo.process
-
- AbstractProcess(int) - Constructor for class kineticMonteCarlo.process.AbstractProcess
-
- AbstractPsdEvaluator - Class in geneticAlgorithm.evaluationFunctions
-
- AbstractPsdEvaluator(int, int, Set, String) - Constructor for class geneticAlgorithm.evaluationFunctions.AbstractPsdEvaluator
-
- AbstractSimulation - Class in basic
-
- AbstractSimulation(Parser) - Constructor for class basic.AbstractSimulation
-
- accelerator - Variable in class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
-
- actionPerformed(ActionEvent) - Method in class graphicInterfaces.growth.GrowthKmcFrame.Pause
-
- activationEnergy - Variable in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
-
- activationEnergy - Variable in class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
-
- ActivationEnergy - Class in kineticMonteCarlo.kmcCore.growth
-
- ActivationEnergy(Parser) - Constructor for class kineticMonteCarlo.kmcCore.growth.ActivationEnergy
-
- activationEnergy - Variable in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
-
- active - Variable in class graphicInterfaces.gaConvergence.GaProgressFrame.ProgressUpdater
-
- active - Variable in class kineticMonteCarlo.kmcCore.worker.KmcWorker
-
- active - Variable in class kineticMonteCarlo.process.AbstractProcess
-
- actualizadata(float[]) - Method in class graphicInterfaces.etching.SiPointArray
-
- add(double, double, double) - Method in class javafx.geometry.Point3D
-
Returns a point with the specified coordinates added to the coordinates
of this point.
- add(Point3D) - Method in class javafx.geometry.Point3D
-
Returns a point with the coordinates of the specified point added to the
coordinates of this point.
- add(T) - Method in class utils.list.atoms.AtomsArrayList
-
- add(Object) - Method in class utils.list.BinnedListIterator
-
- add1stNeighbour(GrapheneAtom, boolean) - Method in class kineticMonteCarlo.lattice.GrapheneLattice
-
- add1stOccupiedNeighbour(GrapheneAtom) - Method in class kineticMonteCarlo.lattice.GrapheneLatticeSimple
-
Éste lo ejecutan los primeros vecinos
- add2ndNeighbour(GrapheneAtom) - Method in class kineticMonteCarlo.lattice.GrapheneLattice
-
- add3rdNeighbour(GrapheneAtom) - Method in class kineticMonteCarlo.lattice.GrapheneLattice
-
- addAtom(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
- addAtom(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.Island
-
- addAtom(AbstractAtom) - Method in class utils.list.AbstractList
-
- addAtom(AbstractAtom) - Method in class utils.list.BinnedList
-
- addAtom(AbstractAtom) - Method in class utils.list.LinearList
-
- addBinsToList(BinnedList) - Method in class utils.list.BinnedListIterator
-
- addBondAtom(AbstractGrowthAtom) - Method in class kineticMonteCarlo.atom.ModifiedBuffer
-
Adds a bond atom to the current modified buffer list.
- addBondAtom(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
- addCoCusNeighbours(int) - Method in class kineticMonteCarlo.atom.CatalysisAtom
-
- addDiffusionProbability(double) - Method in class utils.list.BinnedList
-
Updates the total probability
- addDiffusionProbability(double) - Method in interface utils.list.IProbabilityHolder
-
- addDiffusionProbability(double) - Method in class utils.list.LinearList
-
Updates the diffusion probability.
- addFolderAndSuffix(String, String) - Method in class basic.io.Restart
-
Normalises fileName with the folder and proper suffix.
- addModifiedAtoms(Set<ConcertedAtom>, ConcertedAtom) - Method in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
-
Includes all the first and second neighbourhood of the current atom in a
list without repeated elements.
- addMultiAtomIsland(AbstractGrowthAtom, AbstractGrowthAtom, int) - Method in class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
- addMultiAtomNumber(int) - Method in class kineticMonteCarlo.atom.AbstractGrowthAtomAttributes
-
- addNeighbour(BasicGrowthAtom, int, boolean) - Method in class kineticMonteCarlo.lattice.BasicGrowthLattice
-
A new occupied atom was added before calling this method, here, updating the first and the
second neighbourhood.
- addNeighbour(AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.Concerted6LatticeSimple
-
Éste lo ejecutan los primeros vecinos
- addNewBestIndividual(Individual) - Method in class graphicInterfaces.gaConvergence.GaProgressFrame
-
- addNewBestIndividual(Individual) - Method in class graphicInterfaces.gaConvergence.GaProgressPanel
-
- addNewBestIndividual(Individual) - Method in interface graphicInterfaces.gaConvergence.IgaProgressFrame
-
- addNewBestIndividual(Individual) - Method in class graphicInterfaces.MainInterface
-
- addNImmobile(int) - Method in class kineticMonteCarlo.atom.AgAtom
-
Adds the given number to the number of immobile neighbours.
- addNMobile(int) - Method in class kineticMonteCarlo.atom.AgAtom
-
Adds the given number to the number of mobile neighbours.
- addNoMoreEvaluators() - Method in class geneticAlgorithm.AbstractGeneticAlgorithm
-
- addOccupied() - Method in class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
Adds an occupied location to the counter.
- addOccupiedNeighbour(int) - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
-
An occupied atom is added to current neighbourhood (for the addition, can
be a negative number).
- addOccupiedNeighbour(AgAtom, byte, boolean) - Method in class kineticMonteCarlo.lattice.AgLattice
-
Éste lo ejecutan los primeros vecinos.
- addOccupiedNeighbour(AgAtom) - Method in class kineticMonteCarlo.lattice.AgUcLatticeSimple
-
Éste lo ejecutan los primeros vecinos
- addOneHop() - Method in class kineticMonteCarlo.atom.AbstractGrowthAtomAttributes
-
- addOwnAtom(AbstractGrowthAtom) - Method in class kineticMonteCarlo.atom.ModifiedBuffer
-
Adds an atom to the current modified buffer list.
- addPoint(float, float) - Method in class graphicInterfaces.gaConvergence.ErrorPanel
-
- addProbability(double) - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
-
- addRate(byte, double, int) - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
-
- addRate(byte, double, int) - Method in class kineticMonteCarlo.lattice.Island
-
- addRate(byte, double, int) - Method in class kineticMonteCarlo.lattice.MultiAtom
-
- addRate(double, int) - Method in class kineticMonteCarlo.process.AbstractProcess
-
This process needs a neighbour atom.
- addRate(byte, double, int) - Method in interface kineticMonteCarlo.process.IElement
-
- addRate(T) - Method in class utils.list.atoms.AtomsArrayList
-
Current atom is added.
- addRate(T) - Method in class utils.list.atoms.AtomsAvlTree
-
Rate of current atom is added in the tree.
- addRate(Node<T>, T) - Method in class utils.list.atoms.AtomsAvlTree
-
- addRate(T) - Method in interface utils.list.atoms.IAtomsCollection
-
- addRemovalsSinceLastCleanup() - Method in class utils.list.AbstractList
-
- addSumRate(double) - Method in class kineticMonteCarlo.process.AbstractProcess
-
- addSurfaceSample(float[][]) - Method in class utils.psdAnalysis.PsdSignature2D
-
- addTime(double) - Method in class utils.list.AbstractList
-
- addTime() - Method in class utils.list.AbstractList
-
- addToGraphics() - Method in class geneticAlgorithm.AbstractGeneticAlgorithm
-
- addToPsd(int, float[][]) - Method in class geneticAlgorithm.evaluationFunctions.MultithreadedPsdEvaluator
-
- addToSumRate(byte, double) - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
-
- addToSumRate(byte, double) - Method in class kineticMonteCarlo.lattice.Island
-
- addToSumRate(byte, double) - Method in interface kineticMonteCarlo.process.IElement
-
- ADSORB - Static variable in class kineticMonteCarlo.process.ConcertedProcess
-
- ADSORPTION - Static variable in class kineticMonteCarlo.process.CatalysisProcess
-
- adsorptionData - Variable in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
-
- adsorptionRateCOPerSite - Variable in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
-
- adsorptionRateOPerSite - Variable in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
-
- adsorptionRatePerSite - Variable in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
-
- adsorptionRates - Variable in class ratesLibrary.CatalysisRates
-
- aeOutput - Variable in class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
-
Activation energy output at the end of execution
- aeOutput - Variable in class kineticMonteCarlo.kmcCore.growth.ActivationEnergy
-
- aeOutput - Variable in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
-
Activation energy output at the end of execution
- AgAgKmcConvergence - Class in samples.convergences.agAgGrowth
-
- AgAgKmcConvergence() - Constructor for class samples.convergences.agAgGrowth.AgAgKmcConvergence
-
- AgAgKmcConvergenceDcmaEs - Class in samples.convergences.agAgGrowth
-
- AgAgKmcConvergenceDcmaEs() - Constructor for class samples.convergences.agAgGrowth.AgAgKmcConvergenceDcmaEs
-
- AgAgMultithreadedEvaluatorTest - Class in samples.agAgGrowth
-
- AgAgMultithreadedEvaluatorTest() - Constructor for class samples.agAgGrowth.AgAgMultithreadedEvaluatorTest
-
- AgAgPsdTest - Class in samples.agAgGrowth
-
- AgAgPsdTest() - Constructor for class samples.agAgGrowth.AgAgPsdTest
-
- AgAtom - Class in kineticMonteCarlo.atom
-
- AgAtom(int, short, short) - Constructor for class kineticMonteCarlo.atom.AgAtom
-
- AgAtom(int, int) - Constructor for class kineticMonteCarlo.atom.AgAtom
-
Constructor for unit cell.
- AgAtomSimple - Class in kineticMonteCarlo.atom
-
- AgAtomSimple(int, short, short) - Constructor for class kineticMonteCarlo.atom.AgAtomSimple
-
- AgAtomSimple(int, int) - Constructor for class kineticMonteCarlo.atom.AgAtomSimple
-
- AgBasicPsdEvaluator - Class in geneticAlgorithm.evaluationFunctions
-
- AgBasicPsdEvaluator(AgKmc, int, int, int, int, Set, String, String, float) - Constructor for class geneticAlgorithm.evaluationFunctions.AgBasicPsdEvaluator
-
- AgHierarchyEvaluator - Class in geneticAlgorithm.evaluationFunctions
-
- AgHierarchyEvaluator() - Constructor for class geneticAlgorithm.evaluationFunctions.AgHierarchyEvaluator
-
- AgInitialisator - Class in geneticAlgorithm.populationInitialisation
-
- AgInitialisator() - Constructor for class geneticAlgorithm.populationInitialisation.AgInitialisator
-
- AgKmc - Class in kineticMonteCarlo.kmcCore.growth
-
- AgKmc(Parser) - Constructor for class kineticMonteCarlo.kmcCore.growth.AgKmc
-
- AgLattice - Class in kineticMonteCarlo.lattice
-
- AgLattice(int, int, ModifiedBuffer, HopsPerStep) - Constructor for class kineticMonteCarlo.lattice.AgLattice
-
- AgRatesFromPrbCox - Class in ratesLibrary
-
Etch rates data obtained from Cox et al. - PHYSICAL REVIEW B 71, 11541 2005
- AgRatesFromPrbCox() - Constructor for class ratesLibrary.AgRatesFromPrbCox
-
Atom types are documented in class AbstractAtom.
- AgReduced6Initialisator - Class in geneticAlgorithm.populationInitialisation
-
This class only considers 6 different genes for Ag/Ag growth.
- AgReduced6Initialisator() - Constructor for class geneticAlgorithm.populationInitialisation.AgReduced6Initialisator
-
- AgReduced6Restriction - Class in geneticAlgorithm.restrictions
-
We have only 6 genes, which correspond to all different rates we can find in an Ag/Ag
simulation.
- AgReduced6Restriction() - Constructor for class geneticAlgorithm.restrictions.AgReduced6Restriction
-
- AgReduced6Restriction(int, double, double, boolean) - Constructor for class geneticAlgorithm.restrictions.AgReduced6Restriction
-
- AgReducedInitialisator - Class in geneticAlgorithm.populationInitialisation
-
This class only considers 10 different genes for Ag/Ag growth.
- AgReducedInitialisator() - Constructor for class geneticAlgorithm.populationInitialisation.AgReducedInitialisator
-
- AgReducedRestriction - Class in geneticAlgorithm.restrictions
-
We have only 10 genes, which correspond to all different rates we can find in an Ag/Ag
simulation.
- AgReducedRestriction() - Constructor for class geneticAlgorithm.restrictions.AgReducedRestriction
-
- AgRestriction - Class in geneticAlgorithm.restrictions
-
- AgRestriction(double) - Constructor for class geneticAlgorithm.restrictions.AgRestriction
-
- AgSimpleRates - Class in ratesLibrary
-
- AgSimpleRates() - Constructor for class ratesLibrary.AgSimpleRates
-
- AgSimulation - Class in basic
-
- AgSimulation(Parser) - Constructor for class basic.AgSimulation
-
- AgThreadedPsdEvaluator - Class in geneticAlgorithm.evaluationFunctions
-
- AgThreadedPsdEvaluator(AgKmc, int, int, int, int, int, Set) - Constructor for class geneticAlgorithm.evaluationFunctions.AgThreadedPsdEvaluator
-
- AgTypesTable - Class in kineticMonteCarlo.atom
-
- AgTypesTable() - Constructor for class kineticMonteCarlo.atom.AgTypesTable
-
All predefined type of atom (current if the atom is occupied and future if the atom is not
occupied).
- AgUc - Class in kineticMonteCarlo.unitCell
-
Unit cell of Ag (Silver) lattice.
- AgUc(int, int, List<AgAtom>) - Constructor for class kineticMonteCarlo.unitCell.AgUc
-
- AgUcKmc - Class in kineticMonteCarlo.kmcCore.growth
-
Ag unit cell kinetic Monte Carlo
- AgUcKmc(Parser) - Constructor for class kineticMonteCarlo.kmcCore.growth.AgUcKmc
-
- AgUcLattice - Class in kineticMonteCarlo.lattice
-
Ag lattice with unit cell
- AgUcLattice(int, int, ModifiedBuffer, HopsPerStep, int) - Constructor for class kineticMonteCarlo.lattice.AgUcLattice
-
Creates a lattice to work with hexagonal Ag simulation, based on unit cells (UC).
- AgUcLatticeSimple - Class in kineticMonteCarlo.lattice
-
- AgUcLatticeSimple(int, int, ModifiedBuffer, HopsPerStep, int) - Constructor for class kineticMonteCarlo.lattice.AgUcLatticeSimple
-
Creates a lattice to work with hexagonal Ag simulation, based on unit cells
(UC) in the super class.
- AgUcSimulation - Class in basic
-
- AgUcSimulation(Parser) - Constructor for class basic.AgUcSimulation
-
- ahead2CornersAtom(int) - Method in class kineticMonteCarlo.atom.AgAtom
-
This should be called when a edge jumps to a corner (instead of
expected edge).
- aheadCornerAtom(int) - Method in class kineticMonteCarlo.atom.AgAtom
-
When the current atom's destination is a corner, it jumps over it to the different type edge.
- ALL_OPTS - Static variable in enum basic.EvaluatorType.evaluatorFlag
-
- ALL_OPTS - Static variable in enum basic.EvaluatorType.hierarchyFlag
-
- ALL_OPTS - Static variable in enum basic.io.OutputType.formatFlag
-
- allLessOrEqualThan(double) - Method in class utils.akting.RichArray
-
- allMultiAtomsDifferent(AbstractGrowthAtom, AbstractGrowthAtom) - Method in class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
- allRatesTheSame - Variable in class kineticMonteCarlo.atom.GrapheneAtom
-
- angle(double, double, double) - Method in class javafx.geometry.Point3D
-
Computes the angle (in degrees) between the vector represented
by this point and the specified vector.
- angle(Point3D) - Method in class javafx.geometry.Point3D
-
Computes the angle (in degrees) between the vector represented
by this point and the vector represented by the specified point.
- angle(Point3D, Point3D) - Method in class javafx.geometry.Point3D
-
Computes the angle (in degrees) between the three points with this point
as a vertex.
- angle - Variable in class kineticMonteCarlo.atom.AbstractGrowthAtom
-
- apply(Population) - Method in class geneticAlgorithm.restrictions.RestrictionOperator
-
- apply(double) - Method in class utils.akting.operations.CosOperation
-
- apply(double) - Method in class utils.akting.operations.CustomPiOperation
-
- apply(double) - Method in class utils.akting.operations.DeductOperation
-
- apply(double) - Method in class utils.akting.operations.DivideOperation
-
- apply(double) - Method in class utils.akting.operations.MultiplyOperation
-
- apply(double) - Method in interface utils.akting.operations.Operation
-
- apply(double) - Method in class utils.akting.operations.PowOperation
-
- apply(double) - Method in class utils.akting.operations.SinOperation
-
- apply(double) - Method in class utils.akting.operations.SqrtOperation
-
In the environment of the project we assume that we won't need to calculate negative sqrt.
- apply(Operation) - Method in class utils.akting.RichArray
-
- apply(Operation) - Method in class utils.akting.RichMatrix
-
- applyGrowthAccordingDistanceToPerimeter(float[][]) - Static method in class utils.MathUtils
-
Creates tents for the surface.
- applySymmetryFold(int) - Method in class utils.psdAnalysis.PsdSignature2D
-
It does the average of two points (either vertically or horizontally) and assigns that value to
both points.
- area - Variable in class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
-
Total area of a single flake simulation.
- areAllRatesTheSame() - Method in class kineticMonteCarlo.atom.GrapheneAtom
-
- areCollectionsAutomatic() - Method in class basic.Parser
-
Allow to change between tree and array collections, when the code decides to do so.
- areTwoTerracesTogether() - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
-
- areTwoTerracesTogether() - Method in class kineticMonteCarlo.atom.AgAtom
-
This method tells if two terraces are going to form a dimer.
- areTwoTerracesTogether() - Method in class kineticMonteCarlo.atom.AgAtomSimple
-
This method tells if two terraces are going to form a dimer.
- areTwoTerracesTogether() - Method in class kineticMonteCarlo.atom.BasicGrowthAtom
-
- areTwoTerracesTogether() - Method in class kineticMonteCarlo.atom.CatalysisAtom
-
- areTwoTerracesTogether() - Method in class kineticMonteCarlo.atom.GrapheneAtom
-
- areTwoTerracesTogetherInPerimeter(AbstractGrowthAtom) - Method in class kineticMonteCarlo.atom.AbstractGrowthAtom
-
It has one neighbour.
- ARMCHAIR_EDGE - Static variable in class kineticMonteCarlo.atom.AbstractAtom
-
- arraySize - Variable in class kineticMonteCarlo.atom.ArrayStack
-
- ArrayStack - Class in kineticMonteCarlo.atom
-
Heaps de arrays de probabilidades ([12] doubles)
Tras una inicializacióin, se van sirviendo o realmacenando a petición de los átomos del KMC
evaluado.
- ArrayStack(int) - Constructor for class kineticMonteCarlo.atom.ArrayStack
-
- assignNewWork(int) - Method in class geneticAlgorithm.evaluationFunctions.MultithreadedPsdEvaluator
-
- atom - Variable in class kineticMonteCarlo.unitCell.CatalysisUc
-
- atom - Variable in class kineticMonteCarlo.unitCell.Simple3dUc
-
- atom - Variable in class kineticMonteCarlo.unitCell.SimpleUc
-
- atomAttachedToIsland(AbstractGrowthAtom) - Method in class kineticMonteCarlo.kmcCore.growth.AbstractGrowthKmc
-
An atom has been attached to an island an so printing this to output files.
- atoms - Variable in class kineticMonteCarlo.lattice.BasicLattice
-
- atoms - Variable in class kineticMonteCarlo.lattice.Island
-
- atoms - Variable in class kineticMonteCarlo.lattice.SiLattice
-
- atoms - Variable in class kineticMonteCarlo.unitCell.AgUc
-
- atomsArray - Variable in class utils.list.atoms.AtomsArrayList
-
- AtomsArrayList<T extends java.lang.Comparable<T>> - Class in utils.list.atoms
-
- AtomsArrayList(byte) - Constructor for class utils.list.atoms.AtomsArrayList
-
Array List implementation for atom collection storing.
- AtomsAvlTree<T extends java.lang.Comparable<T>> - Class in utils.list.atoms
-
- AtomsAvlTree(byte, AvlTree) - Constructor for class utils.list.atoms.AtomsAvlTree
-
- AtomsCollection - Class in utils.list.atoms
-
- AtomsCollection(AbstractGrowthLattice, String) - Constructor for class utils.list.atoms.AtomsCollection
-
- atomTypesAmount - Variable in class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
- atomTypesCounter - Variable in class kineticMonteCarlo.lattice.AbstractGrowthLattice
-
- attributes - Variable in class kineticMonteCarlo.atom.AbstractGrowthAtom
-
- attributes - Variable in class kineticMonteCarlo.atom.CatalysisAtom
-
- auto - Variable in class graphicInterfaces.surfaceViewer2D.Panel2D
-
- autoCheckBox - Variable in class graphicInterfaces.surfaceViewer2D.SurfaceViewerPanel2D
-
- autoCleanup - Variable in class utils.list.AbstractList
-
- autoCleanup(boolean) - Method in class utils.list.AbstractList
-
- autoCleanup() - Method in class utils.list.AbstractList
-
- automaticCollections - Variable in class basic.Parser
-
- automaticCollections - Variable in class kineticMonteCarlo.kmcCore.catalysis.CatalysisKmc
-
- automaticCollections - Variable in class kineticMonteCarlo.kmcCore.growth.ConcertedKmc
-
- averaged - Variable in class utils.psdAnalysis.PsdSignature2D
-
- avg() - Method in class utils.akting.RichArray
-
- avgFilter(float[][], int) - Static method in class utils.MathUtils
-
- AvlTree<T extends java.lang.Comparable<T>> - Class in utils.list.atoms
-
- AvlTree() - Constructor for class utils.list.atoms.AvlTree
-
- AvlTree.Itr - Class in utils.list.atoms
-