kineticMonteCarlo.lattice

Class AgUcLatticeSimple

java.lang.Object

kineticMonteCarlo.lattice.AbstractLattice

kineticMonteCarlo.lattice.AbstractGrowthLattice

kineticMonteCarlo.lattice.AgLattice

kineticMonteCarlo.lattice.AgUcLattice

kineticMonteCarlo.lattice.AgUcLatticeSimple

All Implemented Interfaces:

IDevitaLattice

Direct Known Subclasses:

Concerted6LatticeSimple

public class AgUcLatticeSimple
extends AgUcLattice

Author:

J. Alberdi-Rodriguez

Field Summary

Fields inherited from class kineticMonteCarlo.lattice.AbstractGrowthLattice

Y_RATIO

Constructor Summary

Constructors

Constructor and Description
AgUcLatticeSimple(int hexaSizeI, int hexaSizeJ, ModifiedBuffer modified, HopsPerStep distancePerStep, int type) Creates a lattice to work with hexagonal Ag simulation, based on unit cells (UC) in the super class.

Method Summary

Modifier and Type	Method and Description
private void	addOccupiedNeighbour(AgAtom neighbourAtom) Éste lo ejecutan los primeros vecinos
void	deposit(AbstractGrowthAtom a, boolean forceNucleation)
double	extract(AbstractGrowthAtom a) Extract the given atom from the lattice.
private void	removeMobileOccupied(AgAtom neighbourAtom) Computes the removal of one mobile atom.

Methods inherited from class kineticMonteCarlo.lattice.AgUcLattice

changeOccupationByHand, getAtom, getAtom, getAvailableDistance, getCartSizeX, getCartSizeY, getCentralAtom, getCentralCartesianLocation, getCoverage, getFarSite, getUc, getUc, size

Methods inherited from class kineticMonteCarlo.lattice.AgLattice

getCartesianLocation, getCartX, getCartY, getHexagonalCoordinates, getiHexa, getjHexa, getNeighbour, init

Methods inherited from class kineticMonteCarlo.lattice.AbstractGrowthLattice

addAtom, addBondAtom, addOccupied, countIslands, countPerimeter, getAtom, getAtom, getAtomTypesCounter, getAverageGyradius, getCentreOfMass, getCmDistance, getDistancesToCentre, getDistanceToCenter, getDistanceToCenter, getEmptyTypesCounter, getInnerPerimeterLenght, getIsland, getIslandCount, getIslandIterator, getMobileAtoms, getMonomerCount, getMultiAtom, getMultiAtomCount, getMultiAtomIterator, getMultiAtomsIterator, getOccupied, getOuterPerimeterLenght, getTotalHops, getTracerDistance, identifyAddMultiAtom, identifyIsland, identifyRemoveMultiAtomIsland, initialiseRates, printDistances, reset, resetOccupied, setAngles, setAtoms, setAtomsTypesCounter, setInsideCircle, setInsideSquare, subtractOccupied, swapAtomsInMultiAtom, swapIsland

Methods inherited from class kineticMonteCarlo.lattice.AbstractLattice

getHexaSizeI, getHexaSizeJ, getHexaSizeK, getUnitCellSize, isPaused, setHexaSizeI, setHexaSizeJ, setHexaSizeK, setPaused, setProbabilities, setUnitCellSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AgUcLatticeSimple

public AgUcLatticeSimple(int hexaSizeI,
                         int hexaSizeJ,
                         ModifiedBuffer modified,
                         HopsPerStep distancePerStep,
                         int type)

Creates a lattice to work with hexagonal Ag simulation, based on unit cells (UC) in the super class.

Parameters:

hexaSizeI - size in I direction. How many points horizontally.

hexaSizeJ - size in J direction. How many points vertically.

modified - temporary buffer.

distancePerStep - auxiliary class for Devita.

type - whether to use Ag simple, normal or concerted

Method Detail

deposit

public void deposit(AbstractGrowthAtom a,
                    boolean forceNucleation)

Overrides:

deposit in class AgLattice

extract

public double extract(AbstractGrowthAtom a)

Description copied from class: AbstractGrowthLattice

Extract the given atom from the lattice.

Overrides:

extract in class AgLattice

Parameters:

a - the atom to be extracted.

Returns:

probability change (positive value).

addOccupiedNeighbour

private void addOccupiedNeighbour(AgAtom neighbourAtom)

Éste lo ejecutan los primeros vecinos

Parameters:

neighbourAtom - neighbour atom of the original atom

originType - type of the original atom

forceNucleation -

removeMobileOccupied

private void removeMobileOccupied(AgAtom neighbourAtom)

Computes the removal of one mobile atom.

Parameters:

neighbourAtom - neighbour atom of the original atom