AbstractSimulation (Morphokinetics)

java.lang.Object
- basic.AbstractSimulation

Direct Known Subclasses:

AbstractEtchingSimulation, AbstractGrowthSimulation
```
public abstract class AbstractSimulation
extends java.lang.Object
```
Author:

J. Alberdi-Rodriguez

Field Summary

Fields
Modifier and Type	Field and Description
`private float[]`	`coverage`
`private int`	`currentProgress`
`private int[]`	`extentSizes`
`private float`	`gyradius`
`private int`	`islands`
`private long`	`iterationStartTime`
`private AbstractKmc`	`kmc`
`private Parser`	`parser`
`private PsdSignature2D`	`psd`
`private IRates`	`rates`
`private Restart`	`restart`
`private java.lang.String`	`restartFolderName`
`private float[][]`	`sampledSurface`
`private int`	`simulations`
`private long`	`startTime`
`private StaticRandom`	`staticRandom`
`private int[]`	`surfaceSizes`
`private double`	`totalTime`

Constructor Summary

Constructors
Constructor and Description

AbstractSimulation(Parser parser)

Constructors
Constructor and Description
`AbstractSimulation(Parser parser)`

Method Summary

All Methods Static Methods Instance Methods Abstract Methods Concrete Methods
Modifier and Type	Method and Description
`abstract void`	`createFrame()` Creates the simulation frame.
`void`	`doSimulation()`
`abstract void`	`finishSimulation()`
`int`	`getCurrentProgress()`
`AbstractKmc`	`getKmc()`
`Parser`	`getParser()`
`PsdSignature2D`	`getPsd()`
`IRates`	`getRates()`
`IRates`	`getRatesFactory()`
`(package private) java.lang.String`	`getRestartFolderName()`
`double`	`getSimulatedTime()`
`void`	`initialiseKmc()` Initialises Kmc, the basic simulation class
`(package private) abstract void`	`initialiseRates(IRates ratesFactory, Parser myParser)`
`java.lang.String`	`printFooter()`
`static void`	`printHeader()`
`static void`	`printHeader(java.lang.String message)`
`private void`	`printOutput()`
`abstract void`	`printRates(Parser parser)`
`(package private) void`	`printToImage(int i)` Does nothing.
`(package private) void`	`printToImage(java.lang.String folderName, int i)` Does nothing.
`void`	`setKmc(AbstractKmc kmc)`
`void`	`setRates(IRates rates)`
`void`	`updateCurrentProgress()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

kmc
```
private AbstractKmc kmc
```

rates
```
private IRates rates
```

psd
```
private PsdSignature2D psd
```

parser
```
private final Parser parser
```

staticRandom

private final StaticRandom staticRandom

restartFolderName

private final java.lang.String restartFolderName

startTime
```
private long startTime
```

iterationStartTime
```
private long iterationStartTime
```

totalTime
```
private double totalTime
```

coverage
```
private float[] coverage
```

islands
```
private int islands
```

gyradius
```
private float gyradius
```

simulations
```
private int simulations
```

currentProgress
```
private int currentProgress
```

sampledSurface
```
private float[][] sampledSurface
```

surfaceSizes
```
private int[] surfaceSizes
```

extentSizes
```
private int[] extentSizes
```

restart
```
private final Restart restart
```

Constructor Detail

AbstractSimulation

public AbstractSimulation(Parser parser)

Method Detail

printHeader
```
public static void printHeader()
```

printHeader

public static void printHeader(java.lang.String message)

setKmc
```
public void setKmc(AbstractKmc kmc)
```

getKmc
```
public AbstractKmc getKmc()
```

getPsd
```
public PsdSignature2D getPsd()
```

getRates
```
public IRates getRates()
```

setRates
```
public void setRates(IRates rates)
```

getRatesFactory
```
public IRates getRatesFactory()
```

getParser
```
public Parser getParser()
```

getCurrentProgress
```
public int getCurrentProgress()
```

getRestartFolderName

java.lang.String getRestartFolderName()

printRates

public abstract void printRates(Parser parser)

finishSimulation

public abstract void finishSimulation()

createFrame
```
public abstract void createFrame()
```
Creates the simulation frame.

initialiseRates

abstract void initialiseRates(IRates ratesFactory,
                              Parser myParser)

initialiseKmc
```
public void initialiseKmc()
```
Initialises Kmc, the basic simulation class

doSimulation
```
public void doSimulation()
```

updateCurrentProgress
```
public void updateCurrentProgress()
```

getSimulatedTime
```
public double getSimulatedTime()
```

printToImage
```
void printToImage(int i)
```
Does nothing. Used to have a common interface

Parameters:

i -

printToImage
```
void printToImage(java.lang.String folderName,
                  int i)
```
Does nothing. Used to have a common interface

Parameters:

folderName -

i -

printOutput
```
private void printOutput()
```

printFooter
```
public java.lang.String printFooter()
```

Class AbstractSimulation

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

kmc

rates

psd

parser

staticRandom

restartFolderName

startTime

iterationStartTime

totalTime

coverage

islands

gyradius

simulations

currentProgress

sampledSurface

surfaceSizes

extentSizes

restart

Constructor Detail

AbstractSimulation

Method Detail

printHeader

printHeader

setKmc

getKmc

getPsd

getRates

setRates

getRatesFactory

getParser

getCurrentProgress

getRestartFolderName

printRates

finishSimulation

createFrame

initialiseRates

initialiseKmc

doSimulation

updateCurrentProgress

getSimulatedTime

printToImage

printToImage

printOutput

printFooter