kineticMonteCarlo.atom

Class GrapheneAtomGaillard

java.lang.Object

kineticMonteCarlo.atom.AbstractAtom

kineticMonteCarlo.atom.AbstractGrowthAtom

kineticMonteCarlo.atom.GrapheneAtom

kineticMonteCarlo.atom.GrapheneAtomGaillard

All Implemented Interfaces:

java.lang.Comparable, IAtom, IElement

public class GrapheneAtomGaillard
extends GrapheneAtom

Based on paper P. Gaillard, T. Chanier, L. Henrard, P. Moskovkin, S. Lucas. Surface Science, Volumes 637–638, July–August 2015, Pages 11-18, http://dx.doi.org/10.1016/j.susc.2015.02.014.

Author:

J. Alberdi-Rodriguez

Field Summary

Fields

Modifier and Type	Field and Description
private GrapheneGaillardRates	rates

Fields inherited from class kineticMonteCarlo.atom.AbstractAtom

ARMCHAIR_EDGE, BULK, CORNER, EDGE, KINK, SICK, TERRACE, ZIGZAG_EDGE, ZIGZAG_WITH_EXTRA

Constructor Summary

Constructors

Constructor and Description
GrapheneAtomGaillard(int id, short iHexa, short jHexa, HopsPerStep distancePerStep)

Method Summary

Modifier and Type	Method and Description
boolean	isEligible() Only BULK atom types are considered immobile atoms.
double	probJumpToNeighbour(int originType, int pos) Probability to jump to given neighbour position.

Methods inherited from class kineticMonteCarlo.atom.GrapheneAtom

areTwoTerracesTogether, chooseRandomHop, clear, getAllNeighbours, getDistancePerStep, getN1, getN2, getN3, getNeighbour, getNeighbourCount, getNewType, getOrientation, getTypeWithoutNeighbour, isPartOfImmobilSubstrate, obtainRateFromNeighbours, setN1, setNeighbour, setNeighbours, updateOneBound

Methods inherited from class kineticMonteCarlo.atom.AbstractGrowthAtom

addOccupiedNeighbour, addProbability, addRate, addToSumRate, areTwoTerracesTogetherInPerimeter, compareTo, equalRate, equals, getAngle, getAttributes, getBondsProbability, getBondsProbability, getCartesianPosition, getCartesianSuperCell, getDepositionPosition, getDepositionTime, getEdgeRate, getHops, getId, getiHexa, getIslandNumber, getjHexa, getMultiAtomNumber, getMultiplier, getOccupiedNeighbours, getProbability, getProbability, getProbability, getRate, getSumRate, getType, hashCode, initialiseRates, isInnerPerimeter, isIsolated, isOnList, isOuterPerimeter, isOutside, isVisited, remove, removeMultiAtomNumber, removeMultiAtoms, resetPerimeter, resetProbability, setAngle, setAttributes, setBondsProbability, setBondsProbability, setCartesianPosition, setCartesianSuperCell, setDepositionPosition, setDepositionTime, setHops, setInnerPerimeter, setIslandNumber, setMultiAtomNumber, setMultiplier, setOnList, setOuterPerimeter, setOutside, setProcceses, setRate, setSumRate, setType, setVisited, swapAttributes, toString, updateRate

Methods inherited from class kineticMonteCarlo.atom.AbstractAtom

getNumberOfNeighbours, getPos, getProbabilities, getRealType, isOccupied, isOnList, isRemoved, setList, setNeighbour, setNumberOfNeighbours, setOccupied, setProbabilities, setRemoved, unRemove

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

rates

private GrapheneGaillardRates rates

Constructor Detail

GrapheneAtomGaillard

public GrapheneAtomGaillard(int id,
                            short iHexa,
                            short jHexa,
                            HopsPerStep distancePerStep)

Method Detail

probJumpToNeighbour

public double probJumpToNeighbour(int originType,
                                  int pos)

Probability to jump to given neighbour position. Only allowed to jump to first neighbours.

Overrides:

probJumpToNeighbour in class GrapheneAtom

Parameters:

originType -

pos -

Returns:

probability

isEligible

public boolean isEligible()

Only BULK atom types are considered immobile atoms.

Specified by:

isEligible in interface IAtom

Overrides:

isEligible in class GrapheneAtom

Returns:

true if current atom can be moved, false otherwise.