SiUnitCell (Morphokinetics)

java.lang.Object
- kineticMonteCarlo.unitCell.SiUnitCell

public class SiUnitCell
extends java.lang.Object

Author:: N. Ferrando, J. Alberdi-Rodriguez

Field Summary

Fields
Modifier and Type	Field and Description
`private SiAtom[]`	`cellsPointer`
`private static int`	`DEPTH`
`private int`	`iInit`
`private int`	`iSize`
`private int`	`jInit`
`private int`	`jSize`
`private int`	`kInit`
`private int`	`kSize`
`private static double`	`LATTICE_DIM`
`private double`	`limitX`
`private double`	`limitXnt`
`private double`	`limitY`
`private double`	`limitYnt`
`private double`	`limitZ`
`private double`	`limitZnt`
`private byte[]`	`nBlock`
`private short[]`	`neighs`
`private SiAtom[][][]`	`red0`
`private SiAtom[][][]`	`red1`
`private SiAtom[][][]`	`red2`
`private SiAtom[][][]`	`red3`
`private double[][]`	`rotation`
`private static double`	`SPACE_CELL`

Constructor Summary

Constructors
Constructor and Description

SiUnitCell()

Constructors
Constructor and Description
`SiUnitCell()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`private int`	`createAtoms()`
`int`	`createUnitCell(int millerX, int millerY, int millerZ)`
`private short`	`findAtom(double Px, double Py, double Pz)`
`private double`	`getAreaXY(double v1_X, double v1_Y, double v1_Z, double v2_X, double v2_Y, double v2_Z)`
`private double`	`getAreaXYPower(double v1_X, double v1_Y, double v1_Z, double v2_X, double v2_Y, double v2_Z)`
`SiAtom[]`	`getCellsP()`
`private double`	`getCos3D(double v1_X, double v1_Y, double v1_Z, double v2_X, double v2_Y, double v2_Z)`
`double`	`getLimitX()`
`double`	`getLimitY()`
`double`	`getLimitZ()`
`byte[]`	`getNBlock()`
`short[]`	`getNeighs()`
`private double`	`getSin3D(double v1_X, double v1_Y, double v1_Z, double v2_X, double v2_Y, double v2_Z)`
`private void`	`interconect()`
`private void`	`setArraysNeigh()`
`private void`	`setRotacion(double[] m)`
`int`	`size()`
`private double`	`truncate(double valor, int decimales)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

LATTICE_DIM
```
private static final double LATTICE_DIM
```
See Also:

Constant Field Values

SPACE_CELL
```
private static final double SPACE_CELL
```
See Also:

Constant Field Values

DEPTH
```
private static final int DEPTH
```
See Also:

Constant Field Values

rotation
```
private double[][] rotation
```

neighs
```
private short[] neighs
```

nBlock
```
private byte[] nBlock
```

limitX
```
private double limitX
```

limitY
```
private double limitY
```

limitZ
```
private double limitZ
```

limitXnt
```
private double limitXnt
```

limitYnt
```
private double limitYnt
```

limitZnt
```
private double limitZnt
```

red0
```
private SiAtom[][][] red0
```

red1
```
private SiAtom[][][] red1
```

red2
```
private SiAtom[][][] red2
```

red3
```
private SiAtom[][][] red3
```

iInit
```
private int iInit
```

iSize
```
private int iSize
```

jInit
```
private int jInit
```

jSize
```
private int jSize
```

kInit
```
private int kInit
```

kSize
```
private int kSize
```

cellsPointer
```
private SiAtom[] cellsPointer
```

Constructor Detail
- SiUnitCell
```
public SiUnitCell()
```

Method Detail

getCellsP
```
public SiAtom[] getCellsP()
```

getLimitX
```
public double getLimitX()
```

getLimitY
```
public double getLimitY()
```

getLimitZ
```
public double getLimitZ()
```

getNeighs
```
public short[] getNeighs()
```

getNBlock
```
public byte[] getNBlock()
```

createUnitCell

public int createUnitCell(int millerX,
                          int millerY,
                          int millerZ)

size
```
public int size()
```

setRotacion
```
private void setRotacion(double[] m)
```

getCos3D

private double getCos3D(double v1_X,
                        double v1_Y,
                        double v1_Z,
                        double v2_X,
                        double v2_Y,
                        double v2_Z)

getSin3D

private double getSin3D(double v1_X,
                        double v1_Y,
                        double v1_Z,
                        double v2_X,
                        double v2_Y,
                        double v2_Z)

getAreaXY

private double getAreaXY(double v1_X,
                         double v1_Y,
                         double v1_Z,
                         double v2_X,
                         double v2_Y,
                         double v2_Z)

getAreaXYPower

private double getAreaXYPower(double v1_X,
                              double v1_Y,
                              double v1_Z,
                              double v2_X,
                              double v2_Y,
                              double v2_Z)

truncate

private double truncate(double valor,
                        int decimales)

createAtoms
```
private int createAtoms()
```

findAtom

private short findAtom(double Px,
                       double Py,
                       double Pz)

interconect
```
private void interconect()
```

setArraysNeigh
```
private void setArraysNeigh()
```

Class SiUnitCell

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

LATTICE_DIM

SPACE_CELL

DEPTH

rotation

neighs

nBlock

limitX

limitY

limitZ

limitXnt

limitYnt

limitZnt

red0

red1

red2

red3

iInit

iSize

jInit

jSize

kInit

kSize

cellsPointer

Constructor Detail

SiUnitCell

Method Detail

getCellsP

getLimitX

getLimitY

getLimitZ

getNeighs

getNBlock

createUnitCell

size

setRotacion

getCos3D

getSin3D

getAreaXY

getAreaXYPower

truncate

createAtoms

findAtom

interconect

setArraysNeigh