geneticAlgorithm.evaluationFunctions

Class AgThreadedPsdEvaluator

java.lang.Object

geneticAlgorithm.evaluationFunctions.AbstractEvaluator

geneticAlgorithm.evaluationFunctions.AbstractPsdEvaluator

geneticAlgorithm.evaluationFunctions.MultithreadedPsdEvaluator

geneticAlgorithm.evaluationFunctions.AgThreadedPsdEvaluator

All Implemented Interfaces:

IEvaluation, IFinishListener, IIntervalListener

public class AgThreadedPsdEvaluator
extends MultithreadedPsdEvaluator
implements IFinishListener, IIntervalListener

Author:

N. Ferrando, J. Alberdi-Rodriguez

Field Summary

Fields

Modifier and Type	Field and Description
private long	timeLastRender

Fields inherited from class geneticAlgorithm.evaluationFunctions.MultithreadedPsdEvaluator

FPS_GRAPHICS, workers

Constructor Summary

Constructors

Constructor and Description
AgThreadedPsdEvaluator(AgKmc kmc, int repeats, int measureInterval, int numThreads, int psdSizeX, int psdSizeY, java.util.Set flags)

Method Summary

Modifier and Type	Method and Description
protected double	calculateHierarchyError(Individual ind) Calculates the hierarchy error based on the rates of Cox et al.
protected double	calculateHierarchyErrorDiscrete(Individual ind)
protected double	calculateHierarchyErrorFromReference(Individual i)
private static GrowthKmcFrame	createGraphicsFrame(AgKmc kmc)
void	handleSimulationFinish(int workerID, int workID)
void	setHierarchy(double[] genes)
AbstractEvaluator	setShowGraphics(boolean showGraphics)

Methods inherited from class geneticAlgorithm.evaluationFunctions.MultithreadedPsdEvaluator

calculatePsdFromIndividual, dispose, evaluate, handleSimulationIntervalFinish

Methods inherited from class geneticAlgorithm.evaluationFunctions.AbstractPsdEvaluator

calculateFrobeniusNormErrorMatrix, getCurrentDifference, getCurrentError, getCurrentIteration, getCurrentPopulation, getCurrentPsd, getCurrentSimulation, getIndividualCount, getMeasureInterval, getProgressPercent, getPsdSizeX, getPsdSizeY, getRepeats, getSimulationCount, hasKmcFailed, kmcHasFailed, resetKmcError, setCurrentPopulation, setCurrentSimulation, setExpectedSimulationTime, setPsd, setPsdSizeX, setPsdSizeY, setRepeats

Methods inherited from class geneticAlgorithm.evaluationFunctions.AbstractEvaluator

getSurface, getWheight, setWheight, showGraphics

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface kineticMonteCarlo.kmcCore.worker.IIntervalListener

handleSimulationIntervalFinish

Field Detail

timeLastRender

private long timeLastRender

Constructor Detail

AgThreadedPsdEvaluator

public AgThreadedPsdEvaluator(AgKmc kmc,
                              int repeats,
                              int measureInterval,
                              int numThreads,
                              int psdSizeX,
                              int psdSizeY,
                              java.util.Set flags)

Method Detail

createGraphicsFrame

private static GrowthKmcFrame createGraphicsFrame(AgKmc kmc)

setShowGraphics

public AbstractEvaluator setShowGraphics(boolean showGraphics)

Overrides:

setShowGraphics in class AbstractEvaluator

handleSimulationFinish

public void handleSimulationFinish(int workerID,
                                   int workID)

Specified by:

handleSimulationFinish in interface IFinishListener

Overrides:

handleSimulationFinish in class MultithreadedPsdEvaluator

calculateHierarchyError

protected double calculateHierarchyError(Individual ind)

Calculates the hierarchy error based on the rates of Cox et al.

Specified by:

calculateHierarchyError in class AbstractPsdEvaluator

Parameters:

ind - Current individual

Returns:

hierarchy error, at least 6.52e-2

calculateHierarchyErrorFromReference

protected double calculateHierarchyErrorFromReference(Individual i)

Specified by:

calculateHierarchyErrorFromReference in class AbstractPsdEvaluator

calculateHierarchyErrorDiscrete

protected double calculateHierarchyErrorDiscrete(Individual ind)

Specified by:

calculateHierarchyErrorDiscrete in class AbstractPsdEvaluator

setHierarchy

public void setHierarchy(double[] genes)

Specified by:

setHierarchy in class AbstractPsdEvaluator