kineticMonteCarlo.atom

Class AgAtomSimple

java.lang.Object

kineticMonteCarlo.atom.AbstractAtom

kineticMonteCarlo.atom.AbstractGrowthAtom

kineticMonteCarlo.atom.AgAtom

kineticMonteCarlo.atom.AgAtomSimple

All Implemented Interfaces:

java.lang.Comparable, IAtom, IElement

Direct Known Subclasses:

ConcertedAtom

public class AgAtomSimple
extends AgAtom

Author:

J. Alberdi-Rodriguez

Field Summary

Fields inherited from class kineticMonteCarlo.atom.AgAtom

CORNER, EDGE, EDGE_A, EDGE_B, ISLAND, KINK, KINK_A, KINK_B, TERRACE

Fields inherited from class kineticMonteCarlo.atom.AbstractAtom

ARMCHAIR_EDGE, BULK, SICK, ZIGZAG_EDGE, ZIGZAG_WITH_EXTRA

Constructor Summary

Constructors

Constructor and Description
AgAtomSimple(int id, int i)
AgAtomSimple(int id, short iHexa, short jHexa)

Method Summary

Modifier and Type	Method and Description
boolean	areTwoTerracesTogether() This method tells if two terraces are going to form a dimer.
AbstractGrowthAtom	chooseRandomHop() Simpler implementation than AgAtom.chooseRandomHop().
byte	getRealType() Returns the real type of the current atom.
byte	getTypeWithoutNeighbour(int position) Returns the type of the neighbour atom if current one would not exist.
boolean	isEligible()
boolean	isPartOfImmobilSubstrate()
double	probJumpToNeighbour(int ignored, int position)
private boolean	unoccupiedEdgeTwoTerraces() It has two neighbours.
private boolean	unoccupiedKinkThreeTerraces() It has three neighbours.

Methods inherited from class kineticMonteCarlo.atom.AgAtom

addNImmobile, addNMobile, clear, getAllNeighbours, getNeighbour, getNewType, getNImmobile, getNMobile, getOrientation, getOrientation, getPos, obtainRateFromNeighbours, setNeighbour, setNImmobile, setNMobile, updateOneBound

Methods inherited from class kineticMonteCarlo.atom.AbstractGrowthAtom

addOccupiedNeighbour, addProbability, addRate, addToSumRate, areTwoTerracesTogetherInPerimeter, compareTo, equalRate, equals, getAngle, getAttributes, getBondsProbability, getBondsProbability, getCartesianPosition, getCartesianSuperCell, getDepositionPosition, getDepositionTime, getEdgeRate, getHops, getId, getiHexa, getIslandNumber, getjHexa, getMultiAtomNumber, getMultiplier, getOccupiedNeighbours, getProbability, getProbability, getProbability, getRate, getSumRate, getType, hashCode, initialiseRates, isInnerPerimeter, isIsolated, isOnList, isOuterPerimeter, isOutside, isVisited, remove, removeMultiAtomNumber, removeMultiAtoms, resetPerimeter, resetProbability, setAngle, setAttributes, setBondsProbability, setBondsProbability, setCartesianPosition, setCartesianSuperCell, setDepositionPosition, setDepositionTime, setHops, setInnerPerimeter, setIslandNumber, setMultiAtomNumber, setMultiplier, setOnList, setOuterPerimeter, setOutside, setProcceses, setRate, setSumRate, setType, setVisited, swapAttributes, toString, updateRate

Methods inherited from class kineticMonteCarlo.atom.AbstractAtom

getNumberOfNeighbours, getProbabilities, isOccupied, isOnList, isRemoved, setList, setNeighbour, setNumberOfNeighbours, setOccupied, setProbabilities, setRemoved, unRemove

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

AgAtomSimple

public AgAtomSimple(int id,
                    short iHexa,
                    short jHexa)

AgAtomSimple

public AgAtomSimple(int id,
                    int i)

Method Detail

isPartOfImmobilSubstrate

public boolean isPartOfImmobilSubstrate()

Overrides:

isPartOfImmobilSubstrate in class AgAtom

getTypeWithoutNeighbour

public byte getTypeWithoutNeighbour(int position)

Returns the type of the neighbour atom if current one would not exist. Essentially, it has one less neighbour.

Overrides:

getTypeWithoutNeighbour in class AgAtom

Parameters:

position - ignored.

Returns:

the type.

getRealType

public byte getRealType()

Returns the real type of the current atom. This means nothing, in the current atom class is the same as the type.

Specified by:

getRealType in interface IAtom

Overrides:

getRealType in class AgAtom

Returns:

real type of the current atom.

isEligible

public boolean isEligible()

Specified by:

isEligible in interface IAtom

Overrides:

isEligible in class AgAtom

chooseRandomHop

public AbstractGrowthAtom chooseRandomHop()

Simpler implementation than AgAtom.chooseRandomHop(). This one, does not consider corner rounding.

Overrides:

chooseRandomHop in class AgAtom

Returns:

probJumpToNeighbour

public double probJumpToNeighbour(int ignored,
                                  int position)

Overrides:

probJumpToNeighbour in class AgAtom

areTwoTerracesTogether

public boolean areTwoTerracesTogether()

This method tells if two terraces are going to form a dimer. This method should be called from an empty lattice location. In affirmative case, generally, it has two terrace neighbours.

Overrides:

areTwoTerracesTogether in class AgAtom

Returns:

true if two terraces are going to be together.

unoccupiedEdgeTwoTerraces

private boolean unoccupiedEdgeTwoTerraces()

It has two neighbours. Check if those neighbours are terraces.

Returns:

unoccupiedKinkThreeTerraces

private boolean unoccupiedKinkThreeTerraces()

It has three neighbours. Check if those neighbours are terraces.

Returns: