ratesLibrary

Class AbstractBasicGrowthRates

java.lang.Object

ratesLibrary.AbstractBasicGrowthRates

All Implemented Interfaces:

IRates

Direct Known Subclasses:

BasicGrowth2Rates, BasicGrowth3Rates, BasicGrowthSimpleRates, BasicGrowthSyntheticRates

public abstract class AbstractBasicGrowthRates
extends java.lang.Object
implements IRates

Author:

J. Alberdi-Rodriguez

Field Summary

Fields

Modifier and Type	Field and Description
private double	diffusionMl
private double[][]	energies
private double	prefactor

Fields inherited from interface ratesLibrary.IRates

h, hEv, kB, kBInt, Na

Constructor Summary

Constructors

Constructor and Description
AbstractBasicGrowthRates()

Method Summary

Modifier and Type	Method and Description
double	getDepositionRatePerSite()
double	getEnergy(int i, int j)
double	getIslandDensity(double temperature) Returns the island density mono layer depending on the temperature.
private double	getRate(int sourceType, int destinationType, double temperature)
double[]	getRates(double temperature)
double[]	getReduced5Energies()
double[]	getReduced5Rates(float temperature) Calculates rates from the genes.
void	setDepositionFlux(double diffusionMl) Diffusion Mono Layer (F).
void	setEnergies(double[][] energies)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

diffusionMl

private double diffusionMl

prefactor

private final double prefactor

energies

private double[][] energies

Constructor Detail

AbstractBasicGrowthRates

public AbstractBasicGrowthRates()

Method Detail

setEnergies

public final void setEnergies(double[][] energies)

getDepositionRatePerSite

public double getDepositionRatePerSite()

Specified by:

getDepositionRatePerSite in interface IRates

setDepositionFlux

public void setDepositionFlux(double diffusionMl)

Diffusion Mono Layer (F). Utilised to calculate absorption rate. By default it F=0.000035 ML/s. The perimeter deposition is calculated multiplying F (this) and island density.

Specified by:

setDepositionFlux in interface IRates

Parameters:

diffusionMl - diffusion mono layer (deposition flux)

getIslandDensity

public double getIslandDensity(double temperature)

Returns the island density mono layer depending on the temperature. These values are taken from many run of multi flake with 400x400 lattice points

Specified by:

getIslandDensity in interface IRates

Parameters:

temperature -

Returns:

a double density value

getEnergy

public double getEnergy(int i,
                        int j)

Specified by:

getEnergy in interface IRates

getRates

public double[] getRates(double temperature)

Specified by:

getRates in interface IRates

getReduced5Rates

public double[] getReduced5Rates(float temperature)

Calculates rates from the genes. Some of the rates are 0, the rest is calculated from the given genes. Ratio (energy type) | ratio index 0) E_d (0,j) Terrace to any 1) E_c (1,0) Edge to terrace 2) E_f (1,1) Edge to edge 3) E_a (1,2)=(1,3) Edge to kink or island 4) E_b (2,1)=(2,2)=(2,3) Kink to any (but terrace)

Parameters:

temperature -

Returns:

rates[5]

getReduced5Energies

public double[] getReduced5Energies()

getRate

private double getRate(int sourceType,
                       int destinationType,
                       double temperature)