Uses of Class
kineticMonteCarlo.atom.AbstractAtom

Packages that use AbstractAtom

Package	Description
kineticMonteCarlo.atom
kineticMonteCarlo.kmcCore.growth
kineticMonteCarlo.lattice
kineticMonteCarlo.unitCell
utils.list

Uses of AbstractAtom in kineticMonteCarlo.atom

Subclasses of AbstractAtom in kineticMonteCarlo.atom

Modifier and Type	Class and Description
class	AbstractGrowthAtom
class	AgAtom
class	AgAtomSimple
class	BasicAtom
class	BasicGrowthAtom
class	BasicGrowthSimpleAtom
class	CatalysisAtom
class	ConcertedAtom
class	GrapheneAtom
class	GrapheneAtomGaillard Based on paper P.
class	GrapheneAtomGaillard1Neighbour Based on paper P.
class	GrapheneAtomGaillardSimple Based on paper P.
class	GrapheneAtomSchoenhalz Based on paper P.
class	SiAtom

Methods in kineticMonteCarlo.atom with parameters of type AbstractAtom

Modifier and Type	Method and Description
void	AbstractAtom.setNeighbour(AbstractAtom lattice, int i)
void	BasicAtom.setNeighbour(AbstractAtom a, int pos)
void	IAtom.setNeighbour(AbstractAtom atom, int i)
void	SiAtom.setNeighbour(AbstractAtom atom, int pos)

Uses of AbstractAtom in kineticMonteCarlo.kmcCore.growth

Fields in kineticMonteCarlo.kmcCore.growth with type parameters of type AbstractAtom

Modifier and Type	Field and Description
private java.util.ArrayList<AbstractAtom>	ActivationEnergy.surface

Method parameters in kineticMonteCarlo.kmcCore.growth with type arguments of type AbstractAtom

Modifier and Type	Method and Description
void	ActivationEnergy.update(java.util.ArrayList<AbstractAtom> surface)
void	ActivationEnergy.updatePossibles(java.util.Iterator<AbstractAtom> surface, double totalAndDepositionProbability, double elapsedTime)

Uses of AbstractAtom in kineticMonteCarlo.lattice

Methods in kineticMonteCarlo.lattice that return AbstractAtom

Modifier and Type	Method and Description
AbstractAtom	AbstractGrowthLattice.getAtom(int iHexa, int jHexa, int kHexa, int unitCellPos)
abstract AbstractAtom	AbstractLattice.getAtom(int i, int j, int k, int unitCellPos) Deprecated.

Uses of AbstractAtom in kineticMonteCarlo.unitCell

Fields in kineticMonteCarlo.unitCell declared as AbstractAtom

Modifier and Type	Field and Description
private AbstractAtom	Simple3dUc.atom

Methods in kineticMonteCarlo.unitCell that return AbstractAtom

Modifier and Type	Method and Description
AbstractAtom	IUc.getAtom(int pos)
AbstractAtom	Simple3dUc.getAtom(int pos) Always returns the current atom.

Constructors in kineticMonteCarlo.unitCell with parameters of type AbstractAtom

Constructor and Description
Simple3dUc(int posI, int posJ, AbstractAtom atom)
Simple3dUc(int posI, int posJ, int posK, AbstractAtom atom)

Uses of AbstractAtom in utils.list

Fields in utils.list with type parameters of type AbstractAtom

Modifier and Type	Field and Description
private java.util.ArrayList<AbstractAtom>	LinearList.surface

Methods in utils.list that return AbstractAtom

Modifier and Type	Method and Description
abstract AbstractAtom	AbstractList.getAtomAt(int pos)
AbstractAtom	BinnedList.getAtomAt(int position)
AbstractAtom	LinearList.getAtomAt(int position)
abstract AbstractAtom	AbstractList.nextEvent()
AbstractAtom	BinnedList.nextEvent()
AbstractAtom	LinearList.nextEvent()

Methods in utils.list that return types with arguments of type AbstractAtom

Modifier and Type	Method and Description
java.util.ListIterator<AbstractAtom>	LinearList.getIterator()

Methods in utils.list with parameters of type AbstractAtom

Modifier and Type	Method and Description
abstract void	AbstractList.addAtom(AbstractAtom a)
void	BinnedList.addAtom(AbstractAtom atom)
void	LinearList.addAtom(AbstractAtom atom)
abstract void	AbstractList.deleteAtom(AbstractAtom a)
void	BinnedList.deleteAtom(AbstractAtom atom) Not tested.
void	LinearList.deleteAtom(AbstractAtom atom)