Serialized Form (Morphokinetics)

Package geneticAlgorithm
- Class geneticAlgorithm.IndividualGroup extends java.util.ArrayList<Individual> implements Serializable

Package graphicInterfaces

Class graphicInterfaces.MainInterface extends javax.swing.JFrame implements Serializable

Serialized Fields

statusbar
```
javax.swing.JLabel statusbar
```
mainPanel
```
javax.swing.JPanel mainPanel
```

experimentalPsdPanel2d

SurfaceViewerPanel2D experimentalPsdPanel2d

simulationPanel2d
```
SurfaceViewerPanel2D simulationPanel2d
```
diffPanel2d
```
SurfaceViewerPanel2D diffPanel2d
```
surfacePanel2d
```
SurfaceViewerPanel2D surfacePanel2d
```
gaProgressPanel
```
GaProgressPanel gaProgressPanel
```
scaleLabel
```
javax.swing.JLabel scaleLabel
```
growPanel
```
javax.swing.JPanel growPanel
```
mainGrowPanel
```
javax.swing.JPanel mainGrowPanel
```
scrollPane
```
javax.swing.JScrollPane scrollPane
```
mainScroll
```
javax.swing.JScrollPane mainScroll
```
jSpinner2
```
javax.swing.JSpinner jSpinner2
```
growthLayout
```
java.awt.BorderLayout growthLayout
```
noStartDragData
```
boolean noStartDragData
```
mouseX
```
int mouseX
```
mouseY
```
int mouseY
```
startMouseX
```
int startMouseX
```
startMouseY
```
int startMouseY
```
growCanvas
```
KmcCanvas growCanvas
```

Package graphicInterfaces.basic
- Class graphicInterfaces.basic.BasicFrame extends javax.swing.JFrame implements Serializable
  - Serialized Fields
    - zoom
```
int zoom
```
    - jPanel1
```
javax.swing.JPanel jPanel1
```
- Class graphicInterfaces.basic.BasicPanel extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    - kmc
```
BasicKmc kmc
```
    - gradientPaint_bulk
```
java.awt.GradientPaint gradientPaint_bulk
```
    - gradientPaint_etched
```
java.awt.GradientPaint gradientPaint_etched
```
    - zoom
```
int zoom
```
Package graphicInterfaces.etching
- Class graphicInterfaces.etching.Canvas3DOverlay extends javax.media.j3d.Canvas3D implements Serializable
  - Serialized Fields
    - overlayText
```
java.lang.String overlayText
```
- Class graphicInterfaces.etching.SiFrame extends javax.swing.JFrame implements Serializable
  - Serialized Fields
    - sil
```
SiPointArray sil
```
    - jScrollPane1
```
javax.swing.JScrollPane jScrollPane1
```

Package graphicInterfaces.gaConvergence

Class graphicInterfaces.gaConvergence.ErrorPanel extends javax.swing.JPanel implements Serializable
- Serialized Fields
  - Xs
```
java.util.ArrayList<E> Xs
```
  - Ys
```
java.util.ArrayList<E> Ys
```
  - maxX
```
float maxX
```
  - maxY
```
float maxY
```
  - minY
```
float minY
```
  - c
```
java.awt.Color c
```

Class graphicInterfaces.gaConvergence.GaProgressFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

geneticAlgorithm
```
IGeneticAlgorithm geneticAlgorithm
```
Creates new form NewJFrame
panel
```
ErrorPanel panel
```
updater
```
GaProgressFrame.ProgressUpdater updater
```
totalIterations
```
int totalIterations
```
jLabel1
```
javax.swing.JLabel jLabel1
```
jLabel2
```
javax.swing.JLabel jLabel2
```
jLabel3
```
javax.swing.JLabel jLabel3
```
jLabel4
```
javax.swing.JLabel jLabel4
```
jProgressBar1
```
javax.swing.JProgressBar jProgressBar1
```
jProgressBar2
```
javax.swing.JProgressBar jProgressBar2
```
jProgressBar3
```
javax.swing.JProgressBar jProgressBar3
```
jScrollPane1
```
javax.swing.JScrollPane jScrollPane1
```
jScrollPane2
```
javax.swing.JScrollPane jScrollPane2
```
jTable1
```
javax.swing.JTable jTable1
```

Class graphicInterfaces.gaConvergence.GaProgressPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

panel
```
ErrorPanel panel
```
totalIterations
```
int totalIterations
```
jLabel1
```
javax.swing.JLabel jLabel1
```
jLabel2
```
javax.swing.JLabel jLabel2
```
jLabel3
```
javax.swing.JLabel jLabel3
```
jLabel4
```
javax.swing.JLabel jLabel4
```
jProgressBar1
```
javax.swing.JProgressBar jProgressBar1
```
jProgressBar2
```
javax.swing.JProgressBar jProgressBar2
```
jProgressBar3
```
javax.swing.JProgressBar jProgressBar3
```
jScrollPane1
```
javax.swing.JScrollPane jScrollPane1
```
jScrollPane2
```
javax.swing.JScrollPane jScrollPane2
```
jTable1
```
javax.swing.JTable jTable1
```
formatter
```
java.text.DecimalFormat formatter
```

Package graphicInterfaces.growth

Class graphicInterfaces.growth.GrowthKmcFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

mouseX
```
int mouseX
```
mouseY
```
int mouseY
```
startMouseX
```
int startMouseX
```
startMouseY
```
int startMouseY
```
paused
```
boolean paused
```
canvas
```
KmcCanvas canvas
```
pauseButton
```
javax.swing.JButton pauseButton
```
bwButton
```
javax.swing.JToggleButton bwButton
```
pngSaveButton
```
javax.swing.JButton pngSaveButton
```
centreButton
```
javax.swing.JButton centreButton
```
idButton
```
javax.swing.JButton idButton
```
idButtonState
```
int idButtonState
```
labelScale
```
javax.swing.JLabel labelScale
```
panel
```
javax.swing.JPanel panel
```
spinnerScale
```
javax.swing.JSpinner spinnerScale
```
statusbar
```
javax.swing.JLabel statusbar
```
bwMi
```
javax.swing.JCheckBoxMenuItem bwMi
```
centresMi
```
javax.swing.JCheckBoxMenuItem centresMi
```

perimeterMi

javax.swing.JCheckBoxMenuItem perimeterMi

progressBar
```
javax.swing.JProgressBar progressBar
```
maxCoverage
```
int maxCoverage
```
idMi
```
javax.swing.JCheckBoxMenuItem idMi
```
islandsMi
```
javax.swing.JCheckBoxMenuItem islandsMi
```

multiAtomMi

javax.swing.JCheckBoxMenuItem multiAtomMi

pauseIcon
```
javax.swing.ImageIcon pauseIcon
```
resumeIcon
```
javax.swing.ImageIcon resumeIcon
```
pngLastTmpFile
```
int pngLastTmpFile
```

Class graphicInterfaces.growth.KmcCanvas extends java.awt.Canvas implements Serializable
- Serialized Fields
  - baseX
```
int baseX
```
  - baseY
```
int baseY
```
  - strategy
```
java.awt.image.BufferStrategy strategy
```
    Buffer Strategy. Makes the connection with the execution to be able to print it
  - lattice
```
AbstractGrowthLattice lattice
```
  - perimeter
```
RoundPerimeter perimeter
```
  - scale
```
int scale
```
  - imageName
```
java.lang.String imageName
```
  - blackAndWhite
```
boolean blackAndWhite
```
  - printPerimeter
```
boolean printPerimeter
```
  - paused
```
boolean paused
```
  - printId
```
boolean printId
```
  - printIslandNumber
```
boolean printIslandNumber
```
  - printMultiAtom
```
boolean printMultiAtom
```
  - printIslandCentres
```
boolean printIslandCentres
```
  - restart
```
Restart restart
```
  - colours
```
java.awt.Color[] colours
```

Package graphicInterfaces.surfaceViewer2D

Class graphicInterfaces.surfaceViewer2D.Frame2D extends javax.swing.JFrame implements Serializable

Serialized Fields

imageName
```
java.lang.String imageName
```
jCheckBox1
```
javax.swing.JCheckBox jCheckBox1
```
jCheckBox2
```
javax.swing.JCheckBox jCheckBox2
```
jCheckBox3
```
javax.swing.JCheckBox jCheckBox3
```
jComboBox1
```
javax.swing.JComboBox<E> jComboBox1
```
jLabel1
```
javax.swing.JLabel jLabel1
```
jLabel2
```
javax.swing.JLabel jLabel2
```
jPanel1
```
javax.swing.JPanel jPanel1
```
jPanel2
```
javax.swing.JPanel jPanel2
```
jPanel3
```
javax.swing.JPanel jPanel3
```
jPanel4
```
javax.swing.JPanel jPanel4
```
jTextField1
```
javax.swing.JTextField jTextField1
```
jTextField2
```
javax.swing.JTextField jTextField2
```

Class graphicInterfaces.surfaceViewer2D.Panel2D extends javax.swing.JPanel implements Serializable
- Serialized Fields
  - psd
```
float[][] psd
```
  - max
```
double max
```
  - min
```
double min
```
  - log
```
boolean log
```
  - shift
```
boolean shift
```
  - auto
```
boolean auto
```
  - colormap
```
int colormap
```
  - textInfo
```
java.lang.String textInfo
```

Class graphicInterfaces.surfaceViewer2D.SurfaceViewerPanel2D extends javax.swing.JPanel implements Serializable

Serialized Fields

autoCheckBox
```
javax.swing.JCheckBox autoCheckBox
```
shiftCheckBox
```
javax.swing.JCheckBox shiftCheckBox
```
logCheckBox
```
javax.swing.JCheckBox logCheckBox
```
jComboBox1
```
javax.swing.JComboBox<E> jComboBox1
```
minLabel
```
javax.swing.JLabel minLabel
```
maxLabel
```
javax.swing.JLabel maxLabel
```
mainPanel
```
Panel2D mainPanel
```
lowPanel
```
javax.swing.JPanel lowPanel
```
jPanel3
```
javax.swing.JPanel jPanel3
```
jPanel4
```
javax.swing.JPanel jPanel4
```
minTextField
```
javax.swing.JTextField minTextField
```
maxTextField
```
javax.swing.JTextField maxTextField
```
title
```
java.lang.String title
```
formatter
```
java.text.DecimalFormat formatter
```

Package java.awt.geom
- Class java.awt.geom.AffineTransform extends java.lang.Object implements Serializable
  
  serialVersionUID:
  
  1330973210523860834L
  - Serialization Methods
    - readObject
```
private void readObject(java.io.ObjectInputStream arg0)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
```
      Throws:
      
      java.lang.ClassNotFoundException
      
      java.io.IOException
    - writeObject
```
private void writeObject(java.io.ObjectOutputStream arg0)
                  throws java.lang.ClassNotFoundException,
                         java.io.IOException
```
      Throws:
      
      java.lang.ClassNotFoundException
      
      java.io.IOException
  - Serialized Fields
    - m00
```
double m00
```
    - m10
```
double m10
```
    - m01
```
double m01
```
    - m11
```
double m11
```
    - m02
```
double m02
```
    - m12
```
double m12
```
- Class java.awt.geom.Arc2D.Double extends java.awt.geom.Arc2D implements Serializable
  
  serialVersionUID:
  
  728264085846882001L
  - Serialization Methods
    - readObject
```
private void readObject(java.io.ObjectInputStream arg0)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
```
      Throws:
      
      java.lang.ClassNotFoundException
      
      java.io.IOException
    - writeObject
```
private void writeObject(java.io.ObjectOutputStream arg0)
                  throws java.io.IOException
```
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - x
```
double x
```
    - y
```
double y
```
    - width
```
double width
```
    - height
```
double height
```
    - start
```
double start
```
    - extent
```
double extent
```
- Class java.awt.geom.Arc2D.Float extends java.awt.geom.Arc2D implements Serializable
  
  serialVersionUID:
  
  9130893014586380278L
  - Serialization Methods
    - readObject
```
private void readObject(java.io.ObjectInputStream arg0)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
```
      Throws:
      
      java.lang.ClassNotFoundException
      
      java.io.IOException
    - writeObject
```
private void writeObject(java.io.ObjectOutputStream arg0)
                  throws java.io.IOException
```
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - x
```
float x
```
    - y
```
float y
```
    - width
```
float width
```
    - height
```
float height
```
    - start
```
float start
```
    - extent
```
float extent
```
- Class java.awt.geom.CubicCurve2D.Double extends java.awt.geom.CubicCurve2D implements Serializable
  
  serialVersionUID:
  
  -4202960122839707295L
  - Serialized Fields
    - x1
```
double x1
```
    - y1
```
double y1
```
    - ctrlx1
```
double ctrlx1
```
    - ctrly1
```
double ctrly1
```
    - ctrlx2
```
double ctrlx2
```
    - ctrly2
```
double ctrly2
```
    - x2
```
double x2
```
    - y2
```
double y2
```
- Class java.awt.geom.CubicCurve2D.Float extends java.awt.geom.CubicCurve2D implements Serializable
  
  serialVersionUID:
  
  -1272015596714244385L
  - Serialized Fields
    - x1
```
float x1
```
    - y1
```
float y1
```
    - ctrlx1
```
float ctrlx1
```
    - ctrly1
```
float ctrly1
```
    - ctrlx2
```
float ctrlx2
```
    - ctrly2
```
float ctrly2
```
    - x2
```
float x2
```
    - y2
```
float y2
```
- Class java.awt.geom.Ellipse2D.Double extends java.awt.geom.Ellipse2D implements Serializable
  
  serialVersionUID:
  
  5555464816372320683L
  - Serialized Fields
    - x
```
double x
```
    - y
```
double y
```
    - width
```
double width
```
    - height
```
double height
```
- Class java.awt.geom.Ellipse2D.Float extends java.awt.geom.Ellipse2D implements Serializable
  
  serialVersionUID:
  
  -6633761252372475977L
  - Serialized Fields
    - x
```
float x
```
    - y
```
float y
```
    - width
```
float width
```
    - height
```
float height
```
- Class java.awt.geom.GeneralPath extends java.awt.geom.Path2D.Float implements Serializable
  
  serialVersionUID:
  
  -8327096662768731142L
- Class java.awt.geom.IllegalPathStateException extends java.lang.RuntimeException implements Serializable
- Class java.awt.geom.Line2D.Double extends java.awt.geom.Line2D implements Serializable
  
  serialVersionUID:
  
  7979627399746467499L
  - Serialized Fields
    - x1
```
double x1
```
    - y1
```
double y1
```
    - x2
```
double x2
```
    - y2
```
double y2
```
- Class java.awt.geom.Line2D.Float extends java.awt.geom.Line2D implements Serializable
  
  serialVersionUID:
  
  6161772511649436349L
  - Serialized Fields
    - x1
```
float x1
```
    - y1
```
float y1
```
    - x2
```
float x2
```
    - y2
```
float y2
```
- Class java.awt.geom.NoninvertibleTransformException extends java.lang.Exception implements Serializable
- Class java.awt.geom.Path2D.Double extends java.awt.geom.Path2D implements Serializable
  
  serialVersionUID:
  
  1826762518450014216L
  - Serialization Methods
    - readObject
```
private void readObject(java.io.ObjectInputStream arg0)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
```
      Throws:
      
      java.lang.ClassNotFoundException
      
      java.io.IOException
    - writeObject
```
private void writeObject(java.io.ObjectOutputStream arg0)
                  throws java.io.IOException
```
      Throws:
      
      java.io.IOException
- Class java.awt.geom.Path2D.Float extends java.awt.geom.Path2D implements Serializable
  
  serialVersionUID:
  
  6990832515060788886L
  - Serialization Methods
    - readObject
```
private void readObject(java.io.ObjectInputStream arg0)
                 throws java.lang.ClassNotFoundException,
                        java.io.IOException
```
      Throws:
      
      java.lang.ClassNotFoundException
      
      java.io.IOException
    - writeObject
```
private void writeObject(java.io.ObjectOutputStream arg0)
                  throws java.io.IOException
```
      Throws:
      
      java.io.IOException
- Class java.awt.geom.Point2D.Double extends Point2D implements Serializable
  
  serialVersionUID:
  
  6150783262733311327L
  - Serialized Fields
    - x
```
double x
```
      The X coordinate of this Point2D.
      
      Since:
      
      1.2
    - y
```
double y
```
      The Y coordinate of this Point2D.
      
      Since:
      
      1.2
- Class java.awt.geom.Point2D.Float extends Point2D implements Serializable
  
  serialVersionUID:
  
  -2870572449815403710L
  - Serialized Fields
    - x
```
float x
```
      The X coordinate of this Point2D.
      
      Since:
      
      1.2
    - y
```
float y
```
      The Y coordinate of this Point2D.
      
      Since:
      
      1.2
- Class java.awt.geom.QuadCurve2D.Double extends java.awt.geom.QuadCurve2D implements Serializable
  
  serialVersionUID:
  
  4217149928428559721L
  - Serialized Fields
    - x1
```
double x1
```
    - y1
```
double y1
```
    - ctrlx
```
double ctrlx
```
    - ctrly
```
double ctrly
```
    - x2
```
double x2
```
    - y2
```
double y2
```
- Class java.awt.geom.QuadCurve2D.Float extends java.awt.geom.QuadCurve2D implements Serializable
  
  serialVersionUID:
  
  -8511188402130719609L
  - Serialized Fields
    - x1
```
float x1
```
    - y1
```
float y1
```
    - ctrlx
```
float ctrlx
```
    - ctrly
```
float ctrly
```
    - x2
```
float x2
```
    - y2
```
float y2
```
- Class java.awt.geom.Rectangle2D.Double extends java.awt.geom.Rectangle2D implements Serializable
  
  serialVersionUID:
  
  7771313791441850493L
  - Serialized Fields
    - x
```
double x
```
    - y
```
double y
```
    - width
```
double width
```
    - height
```
double height
```
- Class java.awt.geom.Rectangle2D.Float extends java.awt.geom.Rectangle2D implements Serializable
  
  serialVersionUID:
  
  3798716824173675777L
  - Serialized Fields
    - x
```
float x
```
    - y
```
float y
```
    - width
```
float width
```
    - height
```
float height
```
- Class java.awt.geom.RoundRectangle2D.Double extends java.awt.geom.RoundRectangle2D implements Serializable
  
  serialVersionUID:
  
  1048939333485206117L
  - Serialized Fields
    - x
```
double x
```
    - y
```
double y
```
    - width
```
double width
```
    - height
```
double height
```
    - arcwidth
```
double arcwidth
```
    - archeight
```
double archeight
```
- Class java.awt.geom.RoundRectangle2D.Float extends java.awt.geom.RoundRectangle2D implements Serializable
  
  serialVersionUID:
  
  -3423150618393866922L
  - Serialized Fields
    - x
```
float x
```
    - y
```
float y
```
    - width
```
float width
```
    - height
```
float height
```
    - arcwidth
```
float arcwidth
```
    - archeight
```
float archeight
```
Package utils.akting
- Class utils.akting.RichArray extends java.util.ArrayList<java.lang.Double> implements Serializable
  - Serialized Fields
    - capacity
```
int capacity
```
    - errors
```
double[] errors
```
      Support for Individual
    - simulationTime
```
double simulationTime
```
- Class utils.akting.RichMatrix extends java.util.ArrayList<RichArray> implements Serializable
  - Serialized Fields
    - capacity
```
int capacity
```
Package utils.edu.cornell.lassp.houle.rngPack
- Class utils.edu.cornell.lassp.houle.rngPack.RandomSynchronized extends RandomElement implements Serializable
  - Serialization Methods
    - readObject
```
private void readObject(java.io.ObjectInputStream in)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException
```
      Throws:
      
      java.io.IOException
      
      java.lang.ClassNotFoundException
    - writeObject
```
private void writeObject(java.io.ObjectOutputStream out)
                  throws java.io.IOException
```
      We wouldn't want some sneaky person to serialize this in the middle of generating a number
      
      Throws:
      
      java.io.IOException
  - Serialized Fields
    - rng
```
RandomElement rng
```
- Class utils.edu.cornell.lassp.houle.rngPack.Ranecu extends RandomSeedable implements Serializable
  - Serialized Fields
    - iseed1
```
int iseed1
```
    - iseed2
```
int iseed2
```
- Class utils.edu.cornell.lassp.houle.rngPack.Ranlux extends RandomSeedable implements Serializable
  - Serialized Fields
    - iseeds
```
int[] iseeds
```
    - isdext
```
int[] isdext
```
    - next
```
int[] next
```
    - luxlev
```
int luxlev
```
    - nskip
```
int nskip
```
    - inseed
```
int inseed
```
    - jseed
```
int jseed
```
    - in24
```
int in24
```
    - kount
```
int kount
```
    - mkount
```
int mkount
```
    - i24
```
int i24
```
    - j24
```
int j24
```
    - seeds
```
float[] seeds
```
    - carry
```
float carry
```
    - twom24
```
float twom24
```
    - twom12
```
float twom12
```
    - diagOn
```
boolean diagOn
```
- Class utils.edu.cornell.lassp.houle.rngPack.Ranmar extends RandomSeedable implements Serializable
  - Serialized Fields
    - c
```
double c
```
    - cd
```
double cd
```
    - cm
```
double cm
```
    - u
```
double[] u
```
    - uvec
```
double[] uvec
```
    - i97
```
int i97
```
    - j97
```
int j97
```
- Class utils.edu.cornell.lassp.houle.rngPack.RanMT extends RandomSeedable implements Serializable
  - Serialized Fields
    - mt
```
int[] mt
```
    - mti
```
int mti
```
    - mag01
```
int[] mag01
```

Serialized Form

Package geneticAlgorithm

Class geneticAlgorithm.IndividualGroup extends java.util.ArrayList<Individual> implements Serializable

Package graphicInterfaces

Class graphicInterfaces.MainInterface extends javax.swing.JFrame implements Serializable

Serialized Fields

statusbar

mainPanel

experimentalPsdPanel2d

simulationPanel2d

diffPanel2d

surfacePanel2d

gaProgressPanel

scaleLabel

growPanel

mainGrowPanel

scrollPane

mainScroll

jSpinner2

growthLayout

noStartDragData

mouseX

mouseY

startMouseX

startMouseY

growCanvas

Package graphicInterfaces.basic

Class graphicInterfaces.basic.BasicFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

zoom

jPanel1

Class graphicInterfaces.basic.BasicPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

kmc

gradientPaint_bulk

gradientPaint_etched

zoom

Package graphicInterfaces.etching

Class graphicInterfaces.etching.Canvas3DOverlay extends javax.media.j3d.Canvas3D implements Serializable

Serialized Fields

overlayText

Class graphicInterfaces.etching.SiFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

sil

jScrollPane1

Package graphicInterfaces.gaConvergence

Class graphicInterfaces.gaConvergence.ErrorPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

Xs

Ys

maxX

maxY

minY

c

Class graphicInterfaces.gaConvergence.GaProgressFrame extends javax.swing.JFrame implements Serializable

Serialized Fields

geneticAlgorithm

panel

updater

totalIterations

jLabel1

jLabel2

jLabel3

jLabel4

jProgressBar1

jProgressBar2

jProgressBar3

jScrollPane1

jScrollPane2

jTable1

Class graphicInterfaces.gaConvergence.GaProgressPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

panel

totalIterations

jLabel1

jLabel2

jLabel3

jLabel4

jProgressBar1

jProgressBar2