Uses of Class
kineticMonteCarlo.atom.ConcertedAtom

Packages that use ConcertedAtom

Package	Description
kineticMonteCarlo.atom
kineticMonteCarlo.kmcCore.growth

Uses of ConcertedAtom in kineticMonteCarlo.atom

Methods in kineticMonteCarlo.atom that return ConcertedAtom

Modifier and Type	Method and Description
ConcertedAtom	ConcertedAtom.getRandomNeighbour(byte process)

Uses of ConcertedAtom in kineticMonteCarlo.kmcCore.growth

Methods in kineticMonteCarlo.kmcCore.growth that return ConcertedAtom

Modifier and Type	Method and Description
private ConcertedAtom	ConcertedKmc.depositNewAtom()
private ConcertedAtom	ConcertedKmc.depositNewAtom(int id) Deposit new atom in with the given label.

Methods in kineticMonteCarlo.kmcCore.growth that return types with arguments of type ConcertedAtom

Modifier and Type	Method and Description
private java.util.Set<ConcertedAtom>	ConcertedKmc.addModifiedAtoms(java.util.Set<ConcertedAtom> modifiedAtoms, ConcertedAtom atom) Includes all the first and second neighbourhood of the current atom in a list without repeated elements.

Methods in kineticMonteCarlo.kmcCore.growth with parameters of type ConcertedAtom

Modifier and Type	Method and Description
private java.util.Set<ConcertedAtom>	ConcertedKmc.addModifiedAtoms(java.util.Set<ConcertedAtom> modifiedAtoms, ConcertedAtom atom) Includes all the first and second neighbourhood of the current atom in a list without repeated elements.
private boolean	ConcertedKmc.depositAtom(ConcertedAtom atom)
private double	ConcertedKmc.getDiffusionRate(ConcertedAtom atom, ConcertedAtom neighbour, int position)
private void	ConcertedKmc.recomputeAdsorptionProbability(ConcertedAtom atom)
private void	ConcertedKmc.recomputeCollection(byte process, ConcertedAtom atom, double oldRate)
private void	ConcertedKmc.recomputeConcertedDiffusionProbability(ConcertedAtom atom) Doesn't work yet!!
private void	ConcertedKmc.recomputeDiffusionProbability(ConcertedAtom atom)
private void	ConcertedKmc.recomputeMultiAtomProbability(ConcertedAtom atom)
private void	ConcertedKmc.updateRatesIslands(ConcertedAtom origin, ConcertedAtom destination, boolean wasDimer)

Method parameters in kineticMonteCarlo.kmcCore.growth with type arguments of type ConcertedAtom

Modifier and Type	Method and Description
private java.util.Set<ConcertedAtom>	ConcertedKmc.addModifiedAtoms(java.util.Set<ConcertedAtom> modifiedAtoms, ConcertedAtom atom) Includes all the first and second neighbourhood of the current atom in a list without repeated elements.
private void	ConcertedKmc.updateRates(java.util.Set<ConcertedAtom> modifiedAtoms) Updates total adsorption and diffusion probabilities.